Os08g0486200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Splicing factor SC35.
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Os08g0486200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Splicing factor SC35.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.14 | 0.41 | 10.8 | 0.543 | 1.18 | -1.16 | 0.264 | -0.607 | 0.442 | 20.8 | 25.69 | 275 | -- | -- |
| 76.65 | 0.408 | 10.8 | 0.443 | 1.18 | -1.11 | 0.285 | -- | 0.42 | 20.7 | 25.8 | 273 | -- | -- |
| 76.37 | 0.407 | 10.8 | 0.539 | 1.18 | -1.16 | -- | -0.628 | 0.446 | 20.7 | 25.7 | 282 | -- | -- |
| 76.92 | 0.408 | 10.8 | 0.436 | 1.18 | -1.11 | -- | -- | 0.42 | 20.7 | 25.8 | 273 | -- | -- |
| 136.19 | 0.544 | 10.8 | 0.285 | -- | -1.73 | -- | -0.013 | 0.394 | -- | 90.09 | 569 | -- | -- |
| 94.66 | 0.456 | 10.8 | 0.728 | 1.27 | -- | 0.272 | -- | 0.659 | 20.2 | -- | -- | -- | -- |
| 94.89 | 0.456 | 10.8 | 0.72 | 1.27 | -- | -- | -- | 0.66 | 20.2 | -- | -- | -- | -- |
| 134.1 | 0.539 | 10.8 | 0.264 | -- | -1.73 | -- | -- | 0.31 | -- | 29.9 | 556 | -- | -- |
| 81.35 | 0.42 | 10.8 | -- | 1.17 | -1.29 | -- | -- | 0.338 | 20.9 | 25.8 | 266 | -- | -- |
| 184.13 | 0.634 | 10.7 | 0.71 | -- | -- | -- | -- | 0.645 | -- | -- | -- | -- | -- |
| 108.57 | 0.487 | 10.8 | -- | 1.27 | -- | -- | -- | 0.579 | 20.2 | -- | -- | -- | -- |
| 135.84 | 0.543 | 10.8 | -- | -- | -1.81 | -- | -- | 0.263 | -- | 29.72 | 561 | -- | -- |
| 197.44 | 0.656 | 10.7 | -- | -- | -- | -- | -- | 0.566 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.14 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 8 | 69.87 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 14 |
| 24 | 71.42 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 15 |
| 28 | 71.94 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 20 |
| 30 | 72.04 | temperature | 20 | 270 | > th | dose independent | rect. | 7 | 21 |
| 84 | 74.39 | temperature | 15 | 270 | > th | dose dependent | sin | 8 | NA |
| 89 | 74.58 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 96 | 74.72 | temperature | 20 | 10 | > th | dose independent | rect. | 22 | 7 |
| 111 | 75.08 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 113 | 75.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 145 | 75.67 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 6 |
| 146 | 75.67 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 164 | 75.89 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 12 |
| 173 | 75.99 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 20 |
| 208 | 76.29 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 17 |
| 215 | 76.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 256 | 76.50 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 269 | 76.54 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 270 | 76.56 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 271 | 76.56 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 277 | 76.58 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 22 |
| 283 | 76.62 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 294 | 76.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 323 | 76.71 | radiation | 1 | 30 | > th | dose independent | rect. | 5 | 4 |
| 341 | 76.72 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 396 | 76.86 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 418 | 76.91 | radiation | 10 | 10 | < th | dose dependent | sin | 10 | NA |
| 492 | 77.08 | radiation | 1 | 30 | < th | dose independent | sin | 9 | NA |
| 515 | 77.12 | radiation | 1 | 30 | > th | dose independent | sin | 9 | NA |
| 633 | 77.31 | temperature | 15 | 10 | > th | dose dependent | rect. | 22 | 7 |
| 648 | 77.34 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 6 |
| 649 | 77.35 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 752 | 77.53 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 756 | 77.53 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 8 |
| 762 | 77.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 830 | 77.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 841 | 77.69 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 887 | 77.77 | temperature | 20 | 270 | > th | dose independent | sin | 8 | NA |
| 891 | 77.78 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 935 | 77.83 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 941 | 77.86 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 959 | 77.90 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 960 | 77.91 | temperature | 20 | 270 | < th | dose independent | sin | 8 | NA |
| 965 | 77.91 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 23 |