BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0486200 Os08g0486200|AK064030
(289 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0486200 Similar to Splicing factor SC35 230 1e-60
Os07g0623300 Similar to Splicing factor SC35 191 5e-49
Os03g0388000 Similar to Splicing factor SC35 184 5e-47
Os12g0502200 Similar to Low temperature-responsive RNA-bind... 69 4e-12
Os08g0139000 Similar to RNA-binding glycine rich protein (R... 66 3e-11
>Os08g0486200 Similar to Splicing factor SC35
Length = 289
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 112/112 (100%), Positives = 112/112 (100%)
Query: 1 MSHFGRSGPPDIRDTFSLLVLNISFRTTADDLFPLFDRYGKVVDVFIPRDRRTGDSRGFA 60
MSHFGRSGPPDIRDTFSLLVLNISFRTTADDLFPLFDRYGKVVDVFIPRDRRTGDSRGFA
Sbjct: 1 MSHFGRSGPPDIRDTFSLLVLNISFRTTADDLFPLFDRYGKVVDVFIPRDRRTGDSRGFA 60
Query: 61 FVRYKYAEEAQKAIDRLDGRNVDGRNIMVQFAKYGPNAEPIRKGRIIEEVEK 112
FVRYKYAEEAQKAIDRLDGRNVDGRNIMVQFAKYGPNAEPIRKGRIIEEVEK
Sbjct: 61 FVRYKYAEEAQKAIDRLDGRNVDGRNIMVQFAKYGPNAEPIRKGRIIEEVEK 112
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/63 (82%), Positives = 52/63 (82%)
Query: 227 FHSASPTRHSASPPLKGSTPRRSPARNGSPEKETNGKGXXXXXXXXXXXQRAGSRSPGSD 286
FHSASPTRHSASPPLKGSTPRRSPARNGSPEKETNGKG QRAGSRSPGSD
Sbjct: 227 FHSASPTRHSASPPLKGSTPRRSPARNGSPEKETNGKGSPPSRSVSPSPQRAGSRSPGSD 286
Query: 287 DKE 289
DKE
Sbjct: 287 DKE 289
>Os07g0623300 Similar to Splicing factor SC35
Length = 275
Score = 191 bits (486), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 90/110 (81%), Positives = 101/110 (91%)
Query: 1 MSHFGRSGPPDIRDTFSLLVLNISFRTTADDLFPLFDRYGKVVDVFIPRDRRTGDSRGFA 60
MS FGRSGPP IRDT+SLLVLNI+FRTTADDL PLF++YG+VVD++IPRDRRTGDSRGFA
Sbjct: 1 MSRFGRSGPPPIRDTYSLLVLNITFRTTADDLSPLFEKYGEVVDIYIPRDRRTGDSRGFA 60
Query: 61 FVRYKYAEEAQKAIDRLDGRNVDGRNIMVQFAKYGPNAEPIRKGRIIEEV 110
FVRYKY +EAQKA+DRLDGR VDGR IMVQFAKYGPNAE I KG+I+E V
Sbjct: 61 FVRYKYEDEAQKAVDRLDGRVVDGREIMVQFAKYGPNAERIHKGKIMETV 110
>Os03g0388000 Similar to Splicing factor SC35
Length = 205
Score = 184 bits (468), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 86/112 (76%), Positives = 99/112 (88%)
Query: 1 MSHFGRSGPPDIRDTFSLLVLNISFRTTADDLFPLFDRYGKVVDVFIPRDRRTGDSRGFA 60
MS GR GPP +RD++SLLVLN+SFRTTADDL LFDR G+V+D+ IPRDRRTGDSRGFA
Sbjct: 1 MSRLGRYGPPAVRDSYSLLVLNVSFRTTADDLLALFDRCGEVLDIRIPRDRRTGDSRGFA 60
Query: 61 FVRYKYAEEAQKAIDRLDGRNVDGRNIMVQFAKYGPNAEPIRKGRIIEEVEK 112
FVRYKY +EAQKA+D+LDGR VDGR+IMVQFAKYGPNAE I KGRI+EE+ K
Sbjct: 61 FVRYKYEDEAQKAVDKLDGRTVDGRDIMVQFAKYGPNAERIHKGRIVEEISK 112
>Os12g0502200 Similar to Low temperature-responsive RNA-binding protein
Length = 258
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 45/76 (59%)
Query: 18 LLVLNISFRTTADDLFPLFDRYGKVVDVFIPRDRRTGDSRGFAFVRYKYAEEAQKAIDRL 77
L V +S+ T L F YG+V++ I DR TG SRGF F+ Y +EEA AI L
Sbjct: 33 LFVGGLSYGTDEQSLRDTFANYGQVIEAKIINDRETGRSRGFGFITYASSEEASAAITAL 92
Query: 78 DGRNVDGRNIMVQFAK 93
DG+++DGRNI V A
Sbjct: 93 DGKDLDGRNIRVNTAN 108
>Os08g0139000 Similar to RNA-binding glycine rich protein (RGP-2)
Length = 141
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 47/76 (61%)
Query: 18 LLVLNISFRTTADDLFPLFDRYGKVVDVFIPRDRRTGDSRGFAFVRYKYAEEAQKAIDRL 77
L + +S RTT D L F ++G+V+ + DR TG S+GF FVRY E+A K I+ +
Sbjct: 38 LFISGLSKRTTTDGLKEAFAKFGEVIHARVVTDRVTGFSKGFGFVRYATVEDAAKGIEGM 97
Query: 78 DGRNVDGRNIMVQFAK 93
DG+ +DG I ++A+
Sbjct: 98 DGKFLDGWVIFAEYAR 113
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.136 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,960,610
Number of extensions: 251662
Number of successful extensions: 1142
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1156
Number of HSP's successfully gapped: 7
Length of query: 289
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 189
Effective length of database: 11,814,401
Effective search space: 2232921789
Effective search space used: 2232921789
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)