Os07g0623300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Splicing factor SC35.
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Os07g0623300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Splicing factor SC35.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.41 | 0.232 | 12.6 | -0.327 | 0.323 | -1.2 | 0.663 | 0.947 | -0.204 | 11.8 | 29.79 | 10 | -- | -- |
| 25.26 | 0.234 | 12.6 | -0.161 | 0.325 | -1.2 | 0.407 | -- | -0.179 | 11.8 | 28.68 | 11 | -- | -- |
| 25.81 | 0.237 | 12.6 | -0.21 | 0.316 | -1.2 | -- | 0.348 | -0.175 | 11.8 | 29.75 | 10 | -- | -- |
| 25.93 | 0.237 | 12.6 | -0.151 | 0.32 | -1.2 | -- | -- | -0.172 | 11.9 | 28.8 | 11 | -- | -- |
| 30.5 | 0.257 | 12.6 | -0.245 | -- | -1.47 | -- | 0.198 | -0.216 | -- | 29.8 | 5 | -- | -- |
| 45.21 | 0.315 | 12.5 | 0.128 | 0.686 | -- | 0.473 | -- | 0.0753 | 13.1 | -- | -- | -- | -- |
| 46.14 | 0.318 | 12.5 | 0.145 | 0.686 | -- | -- | -- | 0.078 | 13.1 | -- | -- | -- | -- |
| 30.61 | 0.258 | 12.6 | -0.216 | -- | -1.48 | -- | -- | -0.216 | -- | 29.8 | 5 | -- | -- |
| 26.45 | 0.24 | 12.6 | -- | 0.341 | -1.15 | -- | -- | -0.148 | 12 | 28.8 | 11 | -- | -- |
| 75.27 | 0.405 | 12.5 | 0.118 | -- | -- | -- | -- | 0.0643 | -- | -- | -- | -- | -- |
| 46.69 | 0.32 | 12.5 | -- | 0.683 | -- | -- | -- | 0.0619 | 13.1 | -- | -- | -- | -- |
| 31.72 | 0.262 | 12.6 | -- | -- | -1.42 | -- | -- | -0.178 | -- | 29.78 | 5 | -- | -- |
| 75.64 | 0.406 | 12.5 | -- | -- | -- | -- | -- | 0.0512 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.00 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 2 | 24.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 3 | 24.21 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 5 | 24.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 8 | 24.43 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 9 | 24.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 13 | 24.64 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 14 | 24.64 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 16 | 24.69 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 18 | 24.74 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 22 | 25.08 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 22 |
| 23 | 25.19 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 26 | 25.25 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 27 | 25.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 34 | 25.47 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 78 | 26.70 | temperature | 20 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 80 | 26.71 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 111 | 27.24 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 112 | 27.28 | temperature | 25 | 10 | < th | dose dependent | sin | 22 | NA |
| 117 | 27.33 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 133 | 27.49 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 164 | 27.80 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 202 | 28.16 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 209 | 28.23 | temperature | 30 | 30 | < th | dose dependent | sin | 3 | NA |
| 282 | 28.60 | temperature | 10 | 30 | > th | dose dependent | sin | 3 | NA |
| 318 | 28.71 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 436 | 29.18 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 477 | 29.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 21 |
| 569 | 29.55 | temperature | 25 | 90 | < th | dose independent | rect. | 9 | 23 |
| 599 | 29.60 | temperature | 25 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 607 | 29.61 | temperature | 25 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 653 | 29.76 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 18 |
| 665 | 29.78 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 13 |
| 672 | 29.79 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 700 | 29.82 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 787 | 29.91 | temperature | 25 | 1440 | < th | dose dependent | sin | 5 | NA |
| 969 | 30.10 | temperature | 25 | 90 | < th | dose independent | rect. | 21 | 23 |
| 974 | 30.11 | temperature | 25 | 90 | < th | dose independent | no | NA | NA |