BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0623300 Os07g0623300|AK070292
(275 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0623300 Similar to Splicing factor SC35 229 1e-60
Os08g0486200 Similar to Splicing factor SC35 189 1e-48
Os03g0388000 Similar to Splicing factor SC35 189 2e-48
Os11g0704700 RNA-binding region RNP-1 (RNA recognition moti... 69 4e-12
Os03g0363800 Similar to SC35-like splicing factor SCL28, 28 kD 69 5e-12
Os08g0139000 Similar to RNA-binding glycine rich protein (R... 67 1e-11
Os03g0374575 Similar to SC35-like splicing factor SCL30a, 3... 67 1e-11
Os07g0633200 Similar to SC35-like splicing factor SCL30a, 3... 66 3e-11
Os02g0252100 Similar to SC35-like splicing factor SCL30, 30 kD 65 5e-11
Os01g0916600 RNA-binding region RNP-1 (RNA recognition moti... 64 1e-10
>Os07g0623300 Similar to Splicing factor SC35
Length = 275
Score = 229 bits (584), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 110/110 (100%), Positives = 110/110 (100%)
Query: 1 MSRFGRSGPPPIRDTYSLLVLNITFRTTADDLSPLFEKYGEVVDIYIPRDRRTGDSRGFA 60
MSRFGRSGPPPIRDTYSLLVLNITFRTTADDLSPLFEKYGEVVDIYIPRDRRTGDSRGFA
Sbjct: 1 MSRFGRSGPPPIRDTYSLLVLNITFRTTADDLSPLFEKYGEVVDIYIPRDRRTGDSRGFA 60
Query: 61 FVRYKYEDEAQKAVDRLDGRVVDGREIMVQFAKYGPNAERIHKGKIMETV 110
FVRYKYEDEAQKAVDRLDGRVVDGREIMVQFAKYGPNAERIHKGKIMETV
Sbjct: 61 FVRYKYEDEAQKAVDRLDGRVVDGREIMVQFAKYGPNAERIHKGKIMETV 110
>Os08g0486200 Similar to Splicing factor SC35
Length = 289
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 90/110 (81%), Positives = 101/110 (91%)
Query: 1 MSRFGRSGPPPIRDTYSLLVLNITFRTTADDLSPLFEKYGEVVDIYIPRDRRTGDSRGFA 60
MS FGRSGPP IRDT+SLLVLNI+FRTTADDL PLF++YG+VVD++IPRDRRTGDSRGFA
Sbjct: 1 MSHFGRSGPPDIRDTFSLLVLNISFRTTADDLFPLFDRYGKVVDVFIPRDRRTGDSRGFA 60
Query: 61 FVRYKYEDEAQKAVDRLDGRVVDGREIMVQFAKYGPNAERIHKGKIMETV 110
FVRYKY +EAQKA+DRLDGR VDGR IMVQFAKYGPNAE I KG+I+E V
Sbjct: 61 FVRYKYAEEAQKAIDRLDGRNVDGRNIMVQFAKYGPNAEPIRKGRIIEEV 110
>Os03g0388000 Similar to Splicing factor SC35
Length = 205
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 89/110 (80%), Positives = 101/110 (91%)
Query: 1 MSRFGRSGPPPIRDTYSLLVLNITFRTTADDLSPLFEKYGEVVDIYIPRDRRTGDSRGFA 60
MSR GR GPP +RD+YSLLVLN++FRTTADDL LF++ GEV+DI IPRDRRTGDSRGFA
Sbjct: 1 MSRLGRYGPPAVRDSYSLLVLNVSFRTTADDLLALFDRCGEVLDIRIPRDRRTGDSRGFA 60
Query: 61 FVRYKYEDEAQKAVDRLDGRVVDGREIMVQFAKYGPNAERIHKGKIMETV 110
FVRYKYEDEAQKAVD+LDGR VDGR+IMVQFAKYGPNAERIHKG+I+E +
Sbjct: 61 FVRYKYEDEAQKAVDKLDGRTVDGRDIMVQFAKYGPNAERIHKGRIVEEI 110
>Os11g0704700 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 502
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%)
Query: 17 SLLVLNITFRTTADDLSPLFEKYGEVVDIYIPRDRRTGDSRGFAFVRYKYEDEAQKAVDR 76
SL V N+ +D+ F+K+G V D+Y+P+D TG+ RGFAFV + + +A KA
Sbjct: 36 SLFVSNLPRSCRPEDVQVPFQKFGPVRDVYLPKDYNTGEPRGFAFVEFAHSSDASKARYH 95
Query: 77 LDGRVVDGREIMVQFA 92
++ +++ GREI V FA
Sbjct: 96 MNRKMLSGREISVAFA 111
>Os03g0363800 Similar to SC35-like splicing factor SCL28, 28 kD
Length = 243
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 50/76 (65%)
Query: 18 LLVLNITFRTTADDLSPLFEKYGEVVDIYIPRDRRTGDSRGFAFVRYKYEDEAQKAVDRL 77
LLV NI+ +D+ FE++G V D+Y+PR+ T + RGF FV+++Y ++A A L
Sbjct: 63 LLVRNISLTARPEDIRIPFEQFGPVKDVYLPRNFHTRELRGFGFVKFRYPEDAAVAKQEL 122
Query: 78 DGRVVDGREIMVQFAK 93
+ +V+ GREI + FA+
Sbjct: 123 NHQVIGGREISIVFAE 138
>Os08g0139000 Similar to RNA-binding glycine rich protein (RGP-2)
Length = 141
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%)
Query: 17 SLLVLNITFRTTADDLSPLFEKYGEVVDIYIPRDRRTGDSRGFAFVRYKYEDEAQKAVDR 76
+L + ++ RTT D L F K+GEV+ + DR TG S+GF FVRY ++A K ++
Sbjct: 37 NLFISGLSKRTTTDGLKEAFAKFGEVIHARVVTDRVTGFSKGFGFVRYATVEDAAKGIEG 96
Query: 77 LDGRVVDGREIMVQFAK 93
+DG+ +DG I ++A+
Sbjct: 97 MDGKFLDGWVIFAEYAR 113
>Os03g0374575 Similar to SC35-like splicing factor SCL30a, 30a kD
Length = 251
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%)
Query: 17 SLLVLNITFRTTADDLSPLFEKYGEVVDIYIPRDRRTGDSRGFAFVRYKYEDEAQKAVDR 76
SLLV N+ DDL F K+G V DIY+PRD TG+ RGF F++Y ++A A
Sbjct: 45 SLLVRNLRRDCRPDDLRRPFGKFGRVKDIYLPRDYYTGEPRGFGFIQYYDPEDAADAKYH 104
Query: 77 LDGRVVDGREIMVQFAK 93
+DG+++ GRE+ V FA+
Sbjct: 105 MDGQILLGREVTVVFAE 121
>Os07g0633200 Similar to SC35-like splicing factor SCL30a, 30a kD
Length = 213
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%)
Query: 17 SLLVLNITFRTTADDLSPLFEKYGEVVDIYIPRDRRTGDSRGFAFVRYKYEDEAQKAVDR 76
SLLV N+ +DL F ++G + DIYIPRD +G+ RGF FV+Y D+A A
Sbjct: 39 SLLVRNLRRDCRPEDLRRPFGQFGRLKDIYIPRDYYSGEPRGFGFVQYYDPDDAADAKYY 98
Query: 77 LDGRVVDGREIMVQFAK 93
+DG+V+ GRE+ V FA+
Sbjct: 99 MDGQVILGREVAVVFAE 115
>Os02g0252100 Similar to SC35-like splicing factor SCL30, 30 kD
Length = 265
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 48/76 (63%)
Query: 17 SLLVLNITFRTTADDLSPLFEKYGEVVDIYIPRDRRTGDSRGFAFVRYKYEDEAQKAVDR 76
SLLV NI A+DL FE++G V D+Y+P+D TG+ RGFAFV + +A +A
Sbjct: 38 SLLVRNIPLSCRAEDLRVPFERFGPVRDVYLPKDYYTGEPRGFAFVEFVDPYDASEAQYH 97
Query: 77 LDGRVVDGREIMVQFA 92
++ +VV GREI V A
Sbjct: 98 MNRQVVFGREITVVLA 113
>Os01g0916600 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 150
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%)
Query: 18 LLVLNITFRTTADDLSPLFEKYGEVVDIYIPRDRRTGDSRGFAFVRYKYEDEAQKAVDRL 77
L V +++ T D L F +G+V + + DR +G SRGF FV + D+A+ A+D +
Sbjct: 39 LFVGGLSWNTNDDSLKEAFTSFGDVTEARVINDRESGRSRGFGFVSFANGDDAKSAMDAM 98
Query: 78 DGRVVDGREIMVQFAKYGP 96
DG+ ++GR I V FA P
Sbjct: 99 DGKELEGRSIRVNFANERP 117
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.137 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,338,602
Number of extensions: 162807
Number of successful extensions: 623
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 639
Number of HSP's successfully gapped: 10
Length of query: 275
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 176
Effective length of database: 11,866,615
Effective search space: 2088524240
Effective search space used: 2088524240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)