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Os07g0633200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to SC35-like splicing factor SCL30a, 30a kD.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.0292) R2 : 0.841
β1 : 0.788 (0.108) R2dD : 0.0198 R2D : 0.00533
β2 : 3.79 (0.0807) R2dC : 1.02 R2C : 0.611
β3 : -2.54 (0.137) R2dE : 0.169 R2E : -0.212
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.379 (0.064) R2dN8 : 0.0176 R2N8 : 0.0196
σ : 0.544
deviance : 136.54
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C
peak time of C : 10.1
E
wheather : temperature
threshold : 30.91
memory length : 8
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 21.5
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
134.52 0.545 11.3 0.793 3.77 -2.5 0.841 -0.375 0.386 10.1 30.89 9 21.7 --
134.68 0.541 11.3 0.771 3.77 -2.49 0.685 -- 0.38 10.1 30.93 7 21.6 --
136.31 0.544 11.3 0.747 3.85 -2.6 -- 0.387 0.373 10.1 31.18 13 21.5 --
136.54 0.544 11.3 0.788 3.79 -2.54 -- -- 0.379 10.1 30.91 8 21.5 --
188.37 0.639 11.3 1.07 -- -3.87 -- -1.73 0.567 -- 57.55 88 7.76 --
189.57 0.645 11.3 1.11 3.13 -- 1.19 -- 0.686 11.3 -- -- -- --
195.62 0.655 11.3 1.16 3.12 -- -- -- 0.691 11.3 -- -- -- --
192.65 0.646 11.3 1.08 -- -3.44 -- -- 0.628 -- 99.75 58 7.33 --
151.44 0.573 11.3 -- 3.88 -2.88 -- -- 0.258 9.97 30.75 14 21.7 --
804.74 1.33 11.3 1.08 -- -- -- -- 0.661 -- -- -- -- --
231.21 0.711 11.3 -- 3.11 -- -- -- 0.561 11.3 -- -- -- --
222.05 0.696 11.4 -- -- -3.7 -- -- 0.46 -- 63.44 5 6.98 --
835.74 1.35 11.4 -- -- -- -- -- 0.541 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 134.89 temperature 30 10 < th dose dependent sin 4 NA
4 135.42 temperature 10 10 > th dose dependent sin 4 NA
14 137.33 temperature 30 10 < th dose dependent rect. 2 15
24 138.38 temperature 15 10 > th dose dependent rect. 6 21
180 147.62 temperature 20 30 > th dose dependent rect. 20 22
193 148.06 temperature 25 30 > th dose independent rect. 20 22
215 148.82 temperature 30 10 < th dose dependent rect. 1 23
223 148.96 temperature 20 10 > th dose dependent rect. 15 23
246 149.57 temperature 30 90 < th dose dependent rect. 1 22
251 149.77 temperature 20 10 > th dose dependent rect. 20 16
270 150.31 temperature 20 10 > th dose dependent rect. 20 18
284 150.56 temperature 20 90 > th dose dependent rect. 20 15
285 150.58 temperature 30 90 < th dose dependent rect. 23 22
289 150.65 temperature 25 30 > th dose independent rect. 20 18
293 150.70 temperature 25 10 > th dose independent rect. 6 20
302 150.94 temperature 25 30 < th dose independent sin 4 NA
321 151.25 temperature 25 30 > th dose independent sin 4 NA
324 151.31 temperature 10 10 > th dose dependent no NA NA
337 151.55 temperature 30 10 < th dose dependent rect. 21 23
349 151.71 temperature 30 10 < th dose dependent rect. 23 23
352 151.77 temperature 20 30 > th dose dependent rect. 6 12
358 151.83 temperature 30 10 < th dose dependent rect. 11 23
396 152.20 temperature 30 10 < th dose dependent rect. 9 23
413 152.41 temperature 30 30 < th dose dependent rect. 7 23
415 152.45 temperature 20 10 > th dose dependent rect. 6 8
429 152.54 temperature 30 10 < th dose dependent no NA NA
491 153.25 temperature 30 10 < th dose dependent rect. 13 23
514 153.50 temperature 25 10 > th dose independent rect. 6 8
516 153.50 temperature 30 10 < th dose dependent rect. 18 23
519 153.53 temperature 30 10 < th dose dependent rect. 15 23
552 153.88 temperature 20 10 > th dose dependent rect. 17 23
562 153.98 temperature 25 90 < th dose independent rect. 1 16
583 154.21 temperature 25 90 < th dose independent rect. 23 18
623 154.62 temperature 25 30 < th dose independent rect. 3 13
655 154.82 temperature 25 10 > th dose independent rect. 6 6
658 154.83 temperature 25 30 > th dose independent rect. 15 23
675 154.99 temperature 25 90 < th dose independent rect. 23 23
722 155.36 temperature 25 90 < th dose independent rect. 23 20
755 155.70 temperature 25 30 < th dose independent rect. 1 23
779 155.92 temperature 25 30 < th dose independent rect. 3 23
780 155.92 temperature 25 30 < th dose independent rect. 19 23
783 155.93 temperature 25 30 < th dose independent rect. 21 23
789 155.95 temperature 25 30 < th dose independent rect. 11 23
800 156.03 temperature 25 30 < th dose independent rect. 17 23
802 156.04 temperature 25 30 < th dose independent no NA NA
809 156.09 temperature 25 30 < th dose independent rect. 15 23
822 156.15 temperature 25 30 < th dose independent rect. 9 23
823 156.15 temperature 25 30 < th dose independent rect. 13 23
850 156.33 humidity 50 10 > th dose dependent rect. 11 23
863 156.38 temperature 25 30 < th dose independent rect. 7 23
910 156.63 temperature 25 90 < th dose independent rect. 21 20
917 156.66 humidity 90 10 < th dose dependent rect. 15 23
957 156.86 temperature 20 10 > th dose dependent rect. 13 23
991 157.06 temperature 25 30 > th dose independent no NA NA