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Os11g0704700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.0189) R2 : 0.294
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.52 (0.045) R2dC : 0.207 R2C : 0.186
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.292 (0.0398) R2dN8 : 0.108 R2N8 : 0.0863
σ : 0.356
deviance : 58.02
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_____
C
peak time of C : 0.22
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
46.51 0.32 10.4 0.115 0.451 -0.71 0.263 -1.02 0.427 0.305 1.509 4398 -- --
48.64 0.325 10.4 0.128 0.414 -0.62 0.333 -- 0.43 0.0329 1.61 4471 -- --
46.44 0.317 10.4 0.108 0.453 -0.743 -- -1.12 0.428 24 1.5 4458 -- --
48.45 0.324 10.4 0.249 0.32 -0.657 -- -- 0.426 23.5 1.608 4537 -- --
51.41 0.334 10.4 0.0622 -- -0.988 -- -1.07 0.418 -- 1.51 4566 -- --
56.46 0.352 10.4 0.211 0.518 -- 0.351 -- 0.315 0.226 -- -- -- --
56.99 0.354 10.4 0.198 0.517 -- -- -- 0.314 0.199 -- -- -- --
53.51 0.341 10.4 0.338 -- -0.958 -- -- 0.442 -- 1.51 4584 -- --
50.67 0.332 10.4 -- 0.361 -0.692 -- -- 0.425 23.7 1.601 4512 -- --
73.81 0.401 10.4 0.214 -- -- -- -- 0.321 -- -- -- -- --
58.02 0.356 10.4 -- 0.52 -- -- -- 0.292 0.22 -- -- -- --
56.74 0.351 10.4 -- -- -0.939 -- -- 0.45 -- 1.61 4586 -- --
75.02 0.404 10.4 -- -- -- -- -- 0.298 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 44.90 radiation 1.0 270 > th dose independent rect. 17 14
2 45.24 radiation 1.0 270 > th dose independent rect. 18 12
5 46.01 radiation 1.0 4320 > th dose independent rect. 18 15
7 46.06 radiation 1.0 4320 > th dose independent rect. 18 17
11 46.10 radiation 1.0 270 < th dose dependent sin 12 NA
13 46.20 temperature 10.0 270 > th dose dependent rect. 4 16
14 46.21 humidity 70.0 14400 < th dose independent rect. 18 1
16 46.26 radiation 1.0 4320 < th dose independent rect. 18 15
18 46.31 radiation 1.0 270 > th dose independent sin 12 NA
19 46.31 radiation 1.0 4320 < th dose independent rect. 18 17
24 46.34 temperature 15.0 270 > th dose dependent rect. 4 4
25 46.37 humidity 90.0 90 < th dose independent rect. 5 4
26 46.39 radiation 1.0 270 < th dose independent sin 12 NA
27 46.41 radiation 1.0 270 > th dose independent rect. 4 3
37 46.41 humidity 60.0 14400 > th dose dependent rect. 14 1
39 46.45 humidity 80.0 14400 > th dose independent rect. 13 7
42 46.46 humidity 80.0 14400 > th dose independent rect. 14 5
45 46.49 temperature 30.0 14400 < th dose independent rect. 14 2
49 46.51 humidity 80.0 14400 > th dose independent rect. 15 3
52 46.53 temperature 30.0 14400 > th dose independent rect. 14 2
56 46.55 humidity 80.0 14400 < th dose independent rect. 14 4
78 46.61 humidity 90.0 14400 < th dose dependent rect. 16 1
79 46.62 radiation 1.0 4320 > th dose independent rect. 18 1
91 46.64 radiation 1.0 270 > th dose dependent rect. 17 14
96 46.67 radiation 1.0 270 < th dose dependent rect. 5 23
111 46.74 temperature 10.0 270 > th dose dependent rect. 3 6
112 46.75 radiation 20.0 30 < th dose dependent sin 10 NA
117 46.75 radiation 1.0 30 > th dose dependent rect. 17 16
124 46.78 humidity 70.0 14400 < th dose independent rect. 18 14
158 46.88 radiation 1.0 90 > th dose independent sin 10 NA
159 46.88 radiation 1.0 90 < th dose independent sin 10 NA
160 46.88 radiation 1.0 4320 < th dose independent rect. 18 11
163 46.89 radiation 1.0 4320 < th dose independent rect. 18 1
168 46.90 humidity 70.0 14400 < th dose dependent rect. 16 4
170 46.90 humidity 70.0 14400 < th dose dependent rect. 16 15
189 46.92 radiation 1.0 4320 > th dose independent rect. 18 23
193 46.92 humidity 80.0 14400 > th dose dependent rect. 13 11
199 46.94 radiation 1.0 4320 < th dose independent rect. 18 6
204 46.95 humidity 70.0 14400 > th dose independent rect. 18 1
208 46.95 temperature 30.0 14400 < th dose independent rect. 14 15
213 46.95 humidity 90.0 14400 < th dose dependent rect. 15 4
223 46.96 radiation 40.0 4320 < th dose independent rect. 3 7
263 46.98 wind 3.0 43200 < th dose independent rect. 3 3
265 46.98 radiation 1.0 4320 < th dose independent rect. 18 8
271 46.98 humidity 90.0 14400 > th dose independent rect. 13 15
272 46.98 radiation 40.0 4320 < th dose independent rect. 16 18
290 47.00 wind 3.0 43200 > th dose independent rect. 3 3
293 47.00 radiation 40.0 4320 < th dose independent rect. 6 4
295 47.00 humidity 90.0 90 < th dose independent rect. 3 6
317 47.03 humidity 90.0 14400 > th dose independent rect. 17 11
319 47.03 humidity 70.0 14400 > th dose independent rect. 18 14
331 47.04 radiation 1.0 4320 < th dose independent rect. 18 23
338 47.05 humidity 70.0 14400 < th dose independent rect. 16 15
360 47.07 wind 3.0 43200 > th dose dependent rect. 5 2
366 47.08 humidity 80.0 14400 > th dose dependent sin 18 NA
375 47.09 humidity 90.0 14400 > th dose independent sin 15 NA
380 47.09 humidity 90.0 14400 < th dose independent rect. 13 13
454 47.15 humidity 70.0 14400 < th dose independent sin 13 NA
490 47.16 precipitation 0.1 4320 > th dose independent rect. 19 22
519 47.18 wind 3.0 43200 > th dose independent rect. 3 6
528 47.18 precipitation 0.1 4320 < th dose independent rect. 19 22
532 47.18 humidity 90.0 14400 > th dose dependent rect. 18 9
537 47.18 precipitation 0.1 4320 < th dose dependent rect. 19 22
581 47.19 humidity 90.0 14400 > th dose dependent rect. 17 11
672 47.22 humidity 80.0 14400 > th dose dependent rect. 19 1
675 47.22 radiation 1.0 30 > th dose dependent rect. 5 4
714 47.24 humidity 80.0 14400 > th dose independent sin 20 NA
716 47.24 radiation 1.0 4320 > th dose independent rect. 5 4
745 47.25 wind 3.0 43200 < th dose independent rect. 3 6
746 47.25 radiation 1.0 4320 > th dose independent rect. 5 6
770 47.26 humidity 70.0 14400 > th dose independent rect. 16 16
781 47.27 radiation 1.0 4320 < th dose independent rect. 5 4
800 47.27 humidity 70.0 14400 > th dose independent rect. 14 18
814 47.28 humidity 90.0 43200 > th dose independent rect. 9 1
816 47.28 humidity 90.0 14400 < th dose independent rect. 18 8
817 47.28 radiation 1.0 4320 < th dose independent rect. 1 8
824 47.28 wind 1.0 43200 > th dose dependent rect. 3 4
833 47.28 radiation 30.0 4320 > th dose dependent rect. 16 18
834 47.29 humidity 70.0 14400 > th dose independent sin 14 NA
835 47.29 humidity 90.0 14400 < th dose independent sin 16 NA
841 47.29 radiation 1.0 4320 < th dose independent rect. 3 6
853 47.29 radiation 1.0 4320 < th dose independent rect. 23 10
874 47.29 radiation 30.0 4320 > th dose dependent rect. 8 1
875 47.29 humidity 80.0 14400 > th dose dependent rect. 18 3
876 47.29 radiation 30.0 4320 > th dose dependent rect. 7 3
897 47.30 temperature 30.0 14400 > th dose independent sin 15 NA
913 47.30 humidity 70.0 14400 > th dose independent rect. 18 11
918 47.30 humidity 70.0 14400 > th dose independent rect. 16 12
935 47.30 humidity 90.0 14400 > th dose independent rect. 9 22
947 47.31 temperature 30.0 14400 < th dose independent sin 15 NA