BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0704700 Os11g0704700|AK102518
(502 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0704700 RNA-binding region RNP-1 (RNA recognition moti... 813 0.0
Os02g0252100 Similar to SC35-like splicing factor SCL30, 30 kD 150 1e-36
Os12g0572400 Similar to SC35-like splicing factor SCL30, 30 kD 145 7e-35
Os03g0374575 Similar to SC35-like splicing factor SCL30a, 3... 114 2e-25
Os07g0633200 Similar to SC35-like splicing factor SCL30a, 3... 111 1e-24
Os03g0363800 Similar to SC35-like splicing factor SCL28, 28 kD 107 2e-23
Os07g0623300 Similar to Splicing factor SC35 69 6e-12
>Os11g0704700 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 502
Score = 813 bits (2099), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/477 (86%), Positives = 411/477 (86%)
Query: 26 CAKDKEGAAVSLFVSNLPRSCRPEDVQVPFQKFGPVRDVYLPKDYNTGEPRGFAFVEFAH 85
CAKDKEGAAVSLFVSNLPRSCRPEDVQVPFQKFGPVRDVYLPKDYNTGEPRGFAFVEFAH
Sbjct: 26 CAKDKEGAAVSLFVSNLPRSCRPEDVQVPFQKFGPVRDVYLPKDYNTGEPRGFAFVEFAH 85
Query: 86 SSDASKARYHMNRKMLSGREISVAFAVQTRKRPEEMRRIIGARHNSPQRKEECRTNSPGQ 145
SSDASKARYHMNRKMLSGREISVAFAVQTRKRPEEMRRIIGARHNSPQRKEECRTNSPGQ
Sbjct: 86 SSDASKARYHMNRKMLSGREISVAFAVQTRKRPEEMRRIIGARHNSPQRKEECRTNSPGQ 145
Query: 146 PKGHDEKRKRRSYTPKYKDRQYADIGRDETPPAPDSERPWALCRSPRPSPPGQXXXXXXX 205
PKGHDEKRKRRSYTPKYKDRQYADIGRDETPPAPDSERPWALCRSPRPSPPGQ
Sbjct: 146 PKGHDEKRKRRSYTPKYKDRQYADIGRDETPPAPDSERPWALCRSPRPSPPGQSHSRSYS 205
Query: 206 XXXXXXXXDHARTRSCSPAPGRQDDQYASPQRKEHQTKSSGQTKGHDDMRRSYTPEYNEC 265
DHARTRSCSPAPGRQDDQYASPQRKEHQTKSSGQTKGHDDMRRSYTPEYNEC
Sbjct: 206 RSHSLHLHDHARTRSCSPAPGRQDDQYASPQRKEHQTKSSGQTKGHDDMRRSYTPEYNEC 265
Query: 266 QDADNGFDETPPAPDGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXELRGHARSRSCSPAT 325
QDADNGFDETPPAPDGE ELRGHARSRSCSPAT
Sbjct: 266 QDADNGFDETPPAPDGERSSVLGRSPRPSPPGRSHCHSHSRSRSPELRGHARSRSCSPAT 325
Query: 326 GRQDNQSTSPQRREKHQTKSSGQAKEHDEKRRSYTPEYNDRRDADNGYDQTPPAPDGERS 385
GRQDNQSTSPQRREKHQTKSSGQAKEHDEKRRSYTPEYNDRRDADNGYDQTPPAPDGERS
Sbjct: 326 GRQDNQSTSPQRREKHQTKSSGQAKEHDEKRRSYTPEYNDRRDADNGYDQTPPAPDGERS 385
Query: 386 WALXXXXXXXXXXXXXXXXXXXXXXXELRGRARSRSCSPAPGRQGDDQYASPQRKEEQQT 445
WAL ELRGRARSRSCSPAPGRQGDDQYASPQRKEEQQT
Sbjct: 386 WALGRSPQPSPPGRSHFHSHSRSRSPELRGRARSRSCSPAPGRQGDDQYASPQRKEEQQT 445
Query: 446 KSSRQTKEHDEERRSCTPEYSDRRDAFIGHDETPPSAEWGSKLGTVQVISNTAASSN 502
KSSRQTKEHDEERRSCTPEYSDRRDAFIGHDETPPSAEWGSKLGTVQVISNTAASSN
Sbjct: 446 KSSRQTKEHDEERRSCTPEYSDRRDAFIGHDETPPSAEWGSKLGTVQVISNTAASSN 502
>Os02g0252100 Similar to SC35-like splicing factor SCL30, 30 kD
Length = 265
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/212 (45%), Positives = 120/212 (56%), Gaps = 49/212 (23%)
Query: 30 KEGAAVSLFVSNLPRSCRPEDVQVPFQKFGPVRDVYLPKDYNTGEPRGFAFVEFAHSSDA 89
KE + SL V N+P SCR ED++VPF++FGPVRDVYLPKDY TGEPRGFAFVEF DA
Sbjct: 32 KEQGSGSLLVRNIPLSCRAEDLRVPFERFGPVRDVYLPKDYYTGEPRGFAFVEFVDPYDA 91
Query: 90 SKARYHMNRKMLSGREISVAFAVQTRKRPEEMR---RIIGARHN---------------- 130
S+A+YHMNR+++ GREI+V A ++RKRPEEMR R+ G +
Sbjct: 92 SEAQYHMNRQVVFGREITVVLAAESRKRPEEMRSRARVRGYSDHEGRRSSHYGRSRSRSR 151
Query: 131 ---------------------------SPQRKEECRTNSP-GQPKGHDEKRKRRSYTPKY 162
SPQRK+ R SP QPK H+ +KRRSY+P
Sbjct: 152 SRSPRYRGRPRSRSYSPAPRRRDDYSASPQRKDTHRAKSPRRQPKEHEVDKKRRSYSPAN 211
Query: 163 K--DRQYADIGRDETPPAPDSERPWALCRSPR 192
K DR+ AD G ++ P DS+ RSPR
Sbjct: 212 KDGDRRDADNGYEKRSPPADSDGSPPHRRSPR 243
>Os12g0572400 Similar to SC35-like splicing factor SCL30, 30 kD
Length = 263
Score = 145 bits (366), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 84/180 (46%), Positives = 105/180 (58%), Gaps = 45/180 (25%)
Query: 30 KEGAAVSLFVSNLPRSCRPEDVQVPFQKFGPVRDVYLPKDYNTGEPRGFAFVEFAHSSDA 89
+E + SL V N+P SCR ED++VPF++FGPVRDVYLPKDY +GEPRGFAFVEF DA
Sbjct: 32 REQGSGSLLVRNIPLSCRGEDLRVPFERFGPVRDVYLPKDYYSGEPRGFAFVEFVDPYDA 91
Query: 90 SKARYHMNRKMLSGREISVAFAVQTRKRPEEMR---RIIGARHN---------------- 130
S+A+YHMNR++ GREI+V A ++RKRPEEMR R+ G N
Sbjct: 92 SEAQYHMNRQVFFGREITVVLAAESRKRPEEMRSRARVRGYSGNEGRRSSYYGRSRSRSR 151
Query: 131 -------------------------SPQRKEECRTNSP-GQPKGHDEKRKRRSYTPKYKD 164
SP RK+ T SP QPK HDE++KRRSY+P +D
Sbjct: 152 SPHYRGRPRSRSYSPAPRRRDDYSASPPRKDTHPTKSPRRQPKEHDEEKKRRSYSPASRD 211
>Os03g0374575 Similar to SC35-like splicing factor SCL30a, 30a kD
Length = 251
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 49/87 (56%), Positives = 67/87 (77%)
Query: 36 SLFVSNLPRSCRPEDVQVPFQKFGPVRDVYLPKDYNTGEPRGFAFVEFAHSSDASKARYH 95
SL V NL R CRP+D++ PF KFG V+D+YLP+DY TGEPRGF F+++ DA+ A+YH
Sbjct: 45 SLLVRNLRRDCRPDDLRRPFGKFGRVKDIYLPRDYYTGEPRGFGFIQYYDPEDAADAKYH 104
Query: 96 MNRKMLSGREISVAFAVQTRKRPEEMR 122
M+ ++L GRE++V FA + RK+P EMR
Sbjct: 105 MDGQILLGREVTVVFAEENRKKPSEMR 131
>Os07g0633200 Similar to SC35-like splicing factor SCL30a, 30a kD
Length = 213
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 73/99 (73%), Gaps = 3/99 (3%)
Query: 36 SLFVSNLPRSCRPEDVQVPFQKFGPVRDVYLPKDYNTGEPRGFAFVEFAHSSDASKARYH 95
SL V NL R CRPED++ PF +FG ++D+Y+P+DY +GEPRGF FV++ DA+ A+Y+
Sbjct: 39 SLLVRNLRRDCRPEDLRRPFGQFGRLKDIYIPRDYYSGEPRGFGFVQYYDPDDAADAKYY 98
Query: 96 MNRKMLSGREISVAFAVQTRKRPEEMR---RIIGARHNS 131
M+ +++ GRE++V FA + RK+P EMR RI G+R S
Sbjct: 99 MDGQVILGREVAVVFAEENRKKPSEMRSRDRISGSRGRS 137
>Os03g0363800 Similar to SC35-like splicing factor SCL28, 28 kD
Length = 243
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 67/90 (74%)
Query: 33 AAVSLFVSNLPRSCRPEDVQVPFQKFGPVRDVYLPKDYNTGEPRGFAFVEFAHSSDASKA 92
A L V N+ + RPED+++PF++FGPV+DVYLP++++T E RGF FV+F + DA+ A
Sbjct: 59 APTGLLVRNISLTARPEDIRIPFEQFGPVKDVYLPRNFHTRELRGFGFVKFRYPEDAAVA 118
Query: 93 RYHMNRKMLSGREISVAFAVQTRKRPEEMR 122
+ +N +++ GREIS+ FA + RK P+EMR
Sbjct: 119 KQELNHQVIGGREISIVFAEENRKTPQEMR 148
>Os07g0623300 Similar to Splicing factor SC35
Length = 275
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%)
Query: 36 SLFVSNLPRSCRPEDVQVPFQKFGPVRDVYLPKDYNTGEPRGFAFVEFAHSSDASKARYH 95
SL V N+ +D+ F+K+G V D+Y+P+D TG+ RGFAFV + + +A KA
Sbjct: 17 SLLVLNITFRTTADDLSPLFEKYGEVVDIYIPRDRRTGDSRGFAFVRYKYEDEAQKAVDR 76
Query: 96 MNRKMLSGREISVAFA 111
++ +++ GREI V FA
Sbjct: 77 LDGRVVDGREIMVQFA 92
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.310 0.127 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,072,993
Number of extensions: 814876
Number of successful extensions: 3184
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 3163
Number of HSP's successfully gapped: 11
Length of query: 502
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 397
Effective length of database: 11,553,331
Effective search space: 4586672407
Effective search space used: 4586672407
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 158 (65.5 bits)