Os12g0572400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SC35-like splicing factor SCL30, 30 kD.
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Os12g0572400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SC35-like splicing factor SCL30, 30 kD.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.57 | 0.251 | 12.7 | 0.256 | 0.356 | -1.08 | -0.083 | -0.948 | 0.262 | 3.71 | 25.97 | 188 | -- | -- |
| 29.73 | 0.254 | 12.7 | 0.137 | 0.358 | -1.01 | -0.369 | -- | 0.248 | 3.71 | 26.55 | 200 | -- | -- |
| 28.59 | 0.249 | 12.7 | 0.26 | 0.354 | -1.08 | -- | -0.982 | 0.262 | 3.67 | 25.98 | 182 | -- | -- |
| 30.05 | 0.255 | 12.7 | 0.133 | 0.362 | -1 | -- | -- | 0.229 | 3.84 | 26.44 | 191 | -- | -- |
| 33.44 | 0.269 | 12.6 | 0.29 | -- | -0.939 | -- | -0.932 | 0.314 | -- | 24.9 | 249 | -- | -- |
| 44.55 | 0.313 | 12.6 | 0.356 | 0.132 | -- | -0.411 | -- | 0.447 | 3.88 | -- | -- | -- | -- |
| 45.04 | 0.314 | 12.6 | 0.362 | 0.131 | -- | -- | -- | 0.449 | 4.22 | -- | -- | -- | -- |
| 34.75 | 0.275 | 12.7 | 0.157 | -- | -0.844 | -- | -- | 0.286 | -- | 25 | 261 | -- | -- |
| 30.26 | 0.256 | 12.7 | -- | 0.379 | -1.06 | -- | -- | 0.205 | 3.8 | 26.5 | 191 | -- | -- |
| 45.97 | 0.317 | 12.6 | 0.367 | -- | -- | -- | -- | 0.453 | -- | -- | -- | -- | -- |
| 48.5 | 0.326 | 12.6 | -- | 0.138 | -- | -- | -- | 0.409 | 4.17 | -- | -- | -- | -- |
| 34.96 | 0.275 | 12.7 | -- | -- | -0.942 | -- | -- | 0.243 | -- | 25 | 1264 | -- | -- |
| 49.53 | 0.328 | 12.6 | -- | -- | -- | -- | -- | 0.412 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.68 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 2 | 28.87 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 3 | 29.07 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 4 | 29.13 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 10 | 29.20 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 21 | 29.36 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 26 | 29.40 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 42 | 29.57 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 129 | 30.26 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 277 | 30.98 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 324 | 31.17 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 337 | 31.22 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 367 | 31.32 | wind | 9 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 405 | 31.44 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 421 | 31.50 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 453 | 31.60 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 460 | 31.62 | temperature | 10 | 270 | > th | dose dependent | sin | 9 | NA |
| 467 | 31.65 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 483 | 31.68 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 550 | 31.91 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 18 |
| 565 | 31.96 | wind | 9 | 14400 | > th | dose dependent | rect. | 10 | 3 |
| 630 | 32.11 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 9 |
| 663 | 32.17 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 5 |
| 685 | 32.22 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 22 |
| 686 | 32.22 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 2 |
| 705 | 32.26 | wind | 9 | 14400 | > th | dose independent | rect. | 6 | 7 |
| 706 | 32.26 | wind | 9 | 14400 | > th | dose dependent | rect. | 6 | 7 |
| 753 | 32.34 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 22 |
| 775 | 32.37 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 4 |
| 782 | 32.38 | temperature | 25 | 1440 | < th | dose dependent | sin | 16 | NA |
| 892 | 32.54 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 23 |
| 915 | 32.57 | temperature | 25 | 270 | > th | dose independent | rect. | 18 | 22 |
| 921 | 32.58 | wind | 3 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 976 | 32.64 | temperature | 25 | 720 | < th | dose dependent | sin | 20 | NA |