BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0572400 Os12g0572400|AK065531
(263 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0572400 Similar to SC35-like splicing factor SCL30, 30 kD 285 2e-77
Os02g0252100 Similar to SC35-like splicing factor SCL30, 30 kD 252 2e-67
Os11g0704700 RNA-binding region RNP-1 (RNA recognition moti... 140 7e-34
Os03g0374575 Similar to SC35-like splicing factor SCL30a, 3... 127 1e-29
Os07g0633200 Similar to SC35-like splicing factor SCL30a, 3... 123 1e-28
Os03g0363800 Similar to SC35-like splicing factor SCL28, 28 kD 113 1e-25
>Os12g0572400 Similar to SC35-like splicing factor SCL30, 30 kD
Length = 263
Score = 285 bits (730), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 158/231 (68%), Positives = 158/231 (68%)
Query: 33 EQGSGSLLVRNIPLSCRGEDLRVPFERFGPVRDVYLPKDYYSGEPRGFAFVEFVDPYDAS 92
EQGSGSLLVRNIPLSCRGEDLRVPFERFGPVRDVYLPKDYYSGEPRGFAFVEFVDPYDAS
Sbjct: 33 EQGSGSLLVRNIPLSCRGEDLRVPFERFGPVRDVYLPKDYYSGEPRGFAFVEFVDPYDAS 92
Query: 93 EAQYHMNRQVFFGREITVVLAAESRKRPEEMRSRARVXXXXXXXXXXXXXXXXXXXXXXX 152
EAQYHMNRQVFFGREITVVLAAESRKRPEEMRSRARV
Sbjct: 93 EAQYHMNRQVFFGREITVVLAAESRKRPEEMRSRARVRGYSGNEGRRSSYYGRSRSRSRS 152
Query: 153 XXXXXXXXXXXXXXXXXXXDDYSASPPRKDTHPTKSPRRQPKEHDEEKKRRSYSPASRDG 212
DDYSASPPRKDTHPTKSPRRQPKEHDEEKKRRSYSPASRDG
Sbjct: 153 PHYRGRPRSRSYSPAPRRRDDYSASPPRKDTHPTKSPRRQPKEHDEEKKRRSYSPASRDG 212
Query: 213 DPRDADNGYEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVSPARSD 263
DPRDADNGYEK ADVSPARSD
Sbjct: 213 DPRDADNGYEKRSPPPDSDGSPPHRRSPRHSSGSPPGSRSRSADVSPARSD 263
>Os02g0252100 Similar to SC35-like splicing factor SCL30, 30 kD
Length = 265
Score = 252 bits (644), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 145/233 (62%), Positives = 150/233 (64%), Gaps = 2/233 (0%)
Query: 33 EQGSGSLLVRNIPLSCRGEDLRVPFERFGPVRDVYLPKDYYSGEPRGFAFVEFVDPYDAS 92
EQGSGSLLVRNIPLSCR EDLRVPFERFGPVRDVYLPKDYY+GEPRGFAFVEFVDPYDAS
Sbjct: 33 EQGSGSLLVRNIPLSCRAEDLRVPFERFGPVRDVYLPKDYYTGEPRGFAFVEFVDPYDAS 92
Query: 93 EAQYHMNRQVFFGREITVVLAAESRKRPEEMRSRARVX--XXXXXXXXXXXXXXXXXXXX 150
EAQYHMNRQV FGREITVVLAAESRKRPEEMRSRARV
Sbjct: 93 EAQYHMNRQVVFGREITVVLAAESRKRPEEMRSRARVRGYSDHEGRRSSHYGRSRSRSRS 152
Query: 151 XXXXXXXXXXXXXXXXXXXXXDDYSASPPRKDTHPTKSPRRQPKEHDEEKKRRSYSPASR 210
DDYSASP RKDTH KSPRRQPKEH+ +KKRRSYSPA++
Sbjct: 153 RSPRYRGRPRSRSYSPAPRRRDDYSASPQRKDTHRAKSPRRQPKEHEVDKKRRSYSPANK 212
Query: 211 DGDPRDADNGYEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVSPARSD 263
DGD RDADNGYEK AD SPARSD
Sbjct: 213 DGDRRDADNGYEKRSPPADSDGSPPHRRSPRQSSGSPPGSRSRSADGSPARSD 265
>Os11g0704700 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 502
Score = 140 bits (354), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 100/174 (57%), Gaps = 45/174 (25%)
Query: 38 SLLVRNIPLSCRGEDLRVPFERFGPVRDVYLPKDYYSGEPRGFAFVEFVDPYDASEAQYH 97
SL V N+P SCR ED++VPF++FGPVRDVYLPKDY +GEPRGFAFVEF DAS+A+YH
Sbjct: 36 SLFVSNLPRSCRPEDVQVPFQKFGPVRDVYLPKDYNTGEPRGFAFVEFAHSSDASKARYH 95
Query: 98 MNRQVFFGREITVVLAAESRKRPEEMRSRARVXXXXXXXXXXXXXXXXXXXXXXXXXXXX 157
MNR++ GREI+V A ++RKRPEEMR R+
Sbjct: 96 MNRKMLSGREISVAFAVQTRKRPEEMR---RIIGARHN---------------------- 130
Query: 158 XXXXXXXXXXXXXXDDYSASPPRKDTHPTKSPRRQPKEHDEEKKRRSYSPASRD 211
SP RK+ T SP QPK HDE++KRRSY+P +D
Sbjct: 131 -------------------SPQRKEECRTNSP-GQPKGHDEKRKRRSYTPKYKD 164
>Os03g0374575 Similar to SC35-like splicing factor SCL30a, 30a kD
Length = 251
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 56/92 (60%), Positives = 75/92 (81%)
Query: 38 SLLVRNIPLSCRGEDLRVPFERFGPVRDVYLPKDYYSGEPRGFAFVEFVDPYDASEAQYH 97
SLLVRN+ CR +DLR PF +FG V+D+YLP+DYY+GEPRGF F+++ DP DA++A+YH
Sbjct: 45 SLLVRNLRRDCRPDDLRRPFGKFGRVKDIYLPRDYYTGEPRGFGFIQYYDPEDAADAKYH 104
Query: 98 MNRQVFFGREITVVLAAESRKRPEEMRSRARV 129
M+ Q+ GRE+TVV A E+RK+P EMR+R RV
Sbjct: 105 MDGQILLGREVTVVFAEENRKKPSEMRARERV 136
>Os07g0633200 Similar to SC35-like splicing factor SCL30a, 30a kD
Length = 213
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/92 (60%), Positives = 74/92 (80%)
Query: 38 SLLVRNIPLSCRGEDLRVPFERFGPVRDVYLPKDYYSGEPRGFAFVEFVDPYDASEAQYH 97
SLLVRN+ CR EDLR PF +FG ++D+Y+P+DYYSGEPRGF FV++ DP DA++A+Y+
Sbjct: 39 SLLVRNLRRDCRPEDLRRPFGQFGRLKDIYIPRDYYSGEPRGFGFVQYYDPDDAADAKYY 98
Query: 98 MNRQVFFGREITVVLAAESRKRPEEMRSRARV 129
M+ QV GRE+ VV A E+RK+P EMRSR R+
Sbjct: 99 MDGQVILGREVAVVFAEENRKKPSEMRSRDRI 130
>Os03g0363800 Similar to SC35-like splicing factor SCL28, 28 kD
Length = 243
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 70/91 (76%)
Query: 39 LLVRNIPLSCRGEDLRVPFERFGPVRDVYLPKDYYSGEPRGFAFVEFVDPYDASEAQYHM 98
LLVRNI L+ R ED+R+PFE+FGPV+DVYLP+++++ E RGF FV+F P DA+ A+ +
Sbjct: 63 LLVRNISLTARPEDIRIPFEQFGPVKDVYLPRNFHTRELRGFGFVKFRYPEDAAVAKQEL 122
Query: 99 NRQVFFGREITVVLAAESRKRPEEMRSRARV 129
N QV GREI++V A E+RK P+EMR R R
Sbjct: 123 NHQVIGGREISIVFAEENRKTPQEMRMRTRT 153
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.134 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,453,600
Number of extensions: 248660
Number of successful extensions: 1104
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1107
Number of HSP's successfully gapped: 8
Length of query: 263
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 164
Effective length of database: 11,866,615
Effective search space: 1946124860
Effective search space used: 1946124860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 155 (64.3 bits)