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Os02g0252100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to SC35-like splicing factor SCL30, 30 kD.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13 (0.0141) R2 : 0.0866
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.195 (0.0297) R2dN8 : 0.112 R2N8 : 0.0866
σ : 0.266
deviance : 32.39
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.3 0.195 13 0.519 0.335 0.308 0.159 -0.375 0.327 19.3 19.95 1401 -- --
17.41 0.194 13 0.504 0.347 0.305 0.156 -- 0.322 19.5 19.6 1343 -- --
17.23 0.193 13 0.512 0.332 0.311 -- -0.34 0.329 19.5 19.59 1370 -- --
17.47 0.195 13 0.507 0.345 0.305 -- -- 0.326 19.6 19.57 1342 -- --
23.16 0.224 13 0.537 -- 0.309 -- -0.388 0.329 -- 19.6 1477 -- --
20.98 0.215 13 0.469 0.33 -- 0.209 -- 0.252 18.9 -- -- -- --
21.08 0.215 13 0.465 0.331 -- -- -- 0.252 19 -- -- -- --
23.48 0.226 13 0.487 -- 0.321 -- -- 0.338 -- 19.56 1470 -- --
22.08 0.219 13 -- 0.345 0.302 -- -- 0.324 19.5 19.97 24315 -- --
26.84 0.242 13 0.459 -- -- -- -- 0.246 -- -- -- -- --
26.79 0.242 13 -- 0.326 -- -- -- 0.2 19.1 -- -- -- --
27.64 0.245 13 -- -- 0.312 -- -- 0.302 -- 19.86 24452 -- --
32.39 0.266 13 -- -- -- -- -- 0.195 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.30 wind 7.0 43200 < th dose dependent rect. 4 2
5 16.41 wind 1.0 43200 > th dose dependent rect. 4 2
6 16.45 wind 7.0 43200 < th dose dependent rect. 23 7
11 16.47 wind 1.0 43200 > th dose dependent rect. 23 7
12 16.48 radiation 20.0 1440 < th dose independent rect. 11 1
16 16.54 wind 7.0 43200 < th dose dependent rect. 1 5
20 16.57 wind 1.0 43200 > th dose dependent rect. 1 5
85 16.74 wind 5.0 43200 > th dose independent rect. 8 2
86 16.74 wind 5.0 43200 < th dose independent rect. 8 2
110 16.77 wind 9.0 43200 < th dose dependent rect. 3 9
111 16.77 wind 9.0 43200 < th dose dependent rect. 1 11
112 16.77 temperature 30.0 90 < th dose dependent rect. 3 14
113 16.78 wind 1.0 43200 > th dose independent rect. 4 3
114 16.78 wind 9.0 43200 < th dose independent rect. 10 3
126 16.79 wind 3.0 43200 > th dose dependent rect. 5 7
130 16.79 temperature 20.0 10 > th dose dependent rect. 7 9
143 16.80 wind 1.0 43200 > th dose dependent rect. 1 11
154 16.82 wind 1.0 43200 > th dose dependent rect. 1 2
156 16.82 wind 3.0 43200 > th dose dependent rect. 7 5
172 16.83 wind 5.0 43200 > th dose dependent rect. 10 2
186 16.84 temperature 25.0 90 > th dose independent rect. 7 8
208 16.85 temperature 25.0 10 > th dose independent rect. 7 9
223 16.86 wind 9.0 43200 < th dose dependent rect. 1 2
308 16.91 temperature 30.0 10 < th dose dependent rect. 4 14
324 16.93 wind 3.0 43200 > th dose independent rect. 5 1
348 16.94 radiation 10.0 1440 < th dose independent rect. 12 18
349 16.94 wind 5.0 43200 < th dose dependent rect. 8 1
371 16.95 temperature 15.0 270 > th dose dependent rect. 5 9
377 16.96 wind 1.0 43200 < th dose independent rect. 4 3
422 16.99 wind 3.0 43200 < th dose independent rect. 5 1
430 16.99 radiation 10.0 1440 < th dose independent rect. 12 13
436 16.99 temperature 20.0 14400 > th dose dependent rect. 14 1
443 17.00 radiation 10.0 1440 < th dose independent rect. 12 6
466 17.01 radiation 10.0 1440 < th dose independent rect. 10 8
470 17.01 radiation 10.0 1440 < th dose independent rect. 10 14
490 17.02 radiation 10.0 1440 < th dose independent sin 18 NA
492 17.02 radiation 20.0 1440 < th dose independent rect. 11 4
516 17.02 temperature 30.0 90 < th dose dependent rect. 3 12
525 17.03 wind 1.0 43200 > th dose dependent sin 8 NA
540 17.04 temperature 25.0 90 < th dose independent rect. 4 15
542 17.04 wind 9.0 43200 < th dose dependent sin 7 NA
597 17.07 precipitation 0.1 43200 < th dose independent rect. 7 3
624 17.07 radiation 20.0 1440 < th dose dependent rect. 11 1
628 17.07 precipitation 0.1 43200 < th dose dependent rect. 7 3
644 17.08 precipitation 0.1 43200 > th dose independent rect. 6 10
666 17.09 precipitation 0.1 43200 > th dose independent rect. 7 3
684 17.10 humidity 70.0 43200 < th dose independent rect. 17 8
686 17.10 temperature 20.0 720 < th dose independent rect. 21 10
697 17.10 precipitation 0.1 43200 > th dose dependent rect. 7 3
717 17.11 precipitation 0.1 43200 < th dose independent rect. 6 10
718 17.11 temperature 30.0 90 < th dose dependent sin 3 NA
742 17.11 precipitation 0.1 43200 < th dose dependent rect. 6 10
760 17.12 wind 9.0 43200 < th dose dependent rect. 7 5
773 17.13 temperature 20.0 14400 > th dose independent rect. 23 1
812 17.14 temperature 20.0 14400 < th dose independent rect. 23 2
816 17.14 temperature 20.0 720 < th dose independent rect. 23 6
828 17.14 humidity 70.0 43200 < th dose independent rect. 17 15
884 17.16 temperature 25.0 43200 > th dose independent rect. 12 1
886 17.16 radiation 20.0 1440 < th dose independent rect. 8 7
887 17.16 temperature 20.0 720 > th dose independent rect. 22 8
898 17.16 radiation 20.0 4320 < th dose independent rect. 16 16
901 17.16 humidity 90.0 43200 > th dose dependent rect. 9 2
920 17.17 temperature 20.0 720 < th dose independent sin 10 NA
928 17.17 precipitation 0.1 43200 > th dose independent rect. 7 7