BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0252100 Os02g0252100|AK062577
(265 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0252100 Similar to SC35-like splicing factor SCL30, 30 kD 316 9e-87
Os12g0572400 Similar to SC35-like splicing factor SCL30, 30 kD 268 2e-72
Os11g0704700 RNA-binding region RNP-1 (RNA recognition moti... 150 1e-36
Os03g0374575 Similar to SC35-like splicing factor SCL30a, 3... 129 3e-30
Os07g0633200 Similar to SC35-like splicing factor SCL30a, 3... 126 2e-29
Os03g0363800 Similar to SC35-like splicing factor SCL28, 28 kD 118 3e-27
Os07g0623300 Similar to Splicing factor SC35 65 4e-11
>Os02g0252100 Similar to SC35-like splicing factor SCL30, 30 kD
Length = 265
Score = 316 bits (810), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 165/202 (81%), Positives = 165/202 (81%)
Query: 32 KEQGSGSLLVRNIPLSCRAEDLRVPFERFGPVRDVYLPKDYYTGEPRGFAFVEFVDPYDA 91
KEQGSGSLLVRNIPLSCRAEDLRVPFERFGPVRDVYLPKDYYTGEPRGFAFVEFVDPYDA
Sbjct: 32 KEQGSGSLLVRNIPLSCRAEDLRVPFERFGPVRDVYLPKDYYTGEPRGFAFVEFVDPYDA 91
Query: 92 SEAQYHMNRQVVFGREITVVLAAESRKRPEEMRSRARVRGYSDHEXXXXXXXXXXXXXXX 151
SEAQYHMNRQVVFGREITVVLAAESRKRPEEMRSRARVRGYSDHE
Sbjct: 92 SEAQYHMNRQVVFGREITVVLAAESRKRPEEMRSRARVRGYSDHEGRRSSHYGRSRSRSR 151
Query: 152 XXXXXXXXXXXXXXXXXXXXXXDDYSASPQRKDTHRAKSPRRQPKEHEVDKKRRSYSPAN 211
DDYSASPQRKDTHRAKSPRRQPKEHEVDKKRRSYSPAN
Sbjct: 152 SRSPRYRGRPRSRSYSPAPRRRDDYSASPQRKDTHRAKSPRRQPKEHEVDKKRRSYSPAN 211
Query: 212 KDGDRRDADNGYEKRSPPADSD 233
KDGDRRDADNGYEKRSPPADSD
Sbjct: 212 KDGDRRDADNGYEKRSPPADSD 233
>Os12g0572400 Similar to SC35-like splicing factor SCL30, 30 kD
Length = 263
Score = 268 bits (686), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 143/195 (73%), Positives = 150/195 (76%), Gaps = 2/195 (1%)
Query: 32 KEQGSGSLLVRNIPLSCRAEDLRVPFERFGPVRDVYLPKDYYTGEPRGFAFVEFVDPYDA 91
+EQGSGSLLVRNIPLSCR EDLRVPFERFGPVRDVYLPKDYY+GEPRGFAFVEFVDPYDA
Sbjct: 32 REQGSGSLLVRNIPLSCRGEDLRVPFERFGPVRDVYLPKDYYSGEPRGFAFVEFVDPYDA 91
Query: 92 SEAQYHMNRQVVFGREITVVLAAESRKRPEEMRSRARVRGYSDHEXXXXXXXXXXXXXXX 151
SEAQYHMNRQV FGREITVVLAAESRKRPEEMRSRARVRGYS +E
Sbjct: 92 SEAQYHMNRQVFFGREITVVLAAESRKRPEEMRSRARVRGYSGNE--GRRSSYYGRSRSR 149
Query: 152 XXXXXXXXXXXXXXXXXXXXXXDDYSASPQRKDTHRAKSPRRQPKEHEVDKKRRSYSPAN 211
DDYSASP RKDTH KSPRRQPKEH+ +KKRRSYSPA+
Sbjct: 150 SRSPHYRGRPRSRSYSPAPRRRDDYSASPPRKDTHPTKSPRRQPKEHDEEKKRRSYSPAS 209
Query: 212 KDGDRRDADNGYEKR 226
+DGD RDADNGYEKR
Sbjct: 210 RDGDPRDADNGYEKR 224
>Os11g0704700 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 502
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/202 (45%), Positives = 116/202 (57%), Gaps = 49/202 (24%)
Query: 32 KEQGSGSLLVRNIPLSCRAEDLRVPFERFGPVRDVYLPKDYYTGEPRGFAFVEFVDPYDA 91
KE + SL V N+P SCR ED++VPF++FGPVRDVYLPKDY TGEPRGFAFVEF DA
Sbjct: 30 KEGAAVSLFVSNLPRSCRPEDVQVPFQKFGPVRDVYLPKDYNTGEPRGFAFVEFAHSSDA 89
Query: 92 SEAQYHMNRQVVFGREITVVLAAESRKRPEEMRSRARVRGYSDHEXXXXXXXXXXXXXXX 151
S+A+YHMNR+++ GREI+V A ++RKRPEEMR R+ G +
Sbjct: 90 SKARYHMNRKMLSGREISVAFAVQTRKRPEEMR---RIIGARHN---------------- 130
Query: 152 XXXXXXXXXXXXXXXXXXXXXXDDYSASPQRKDTHRAKSPRRQPKEHEVDKKRRSYSPAN 211
SPQRK+ R SP QPK H+ +KRRSY+P
Sbjct: 131 ---------------------------SPQRKEECRTNSP-GQPKGHDEKRKRRSYTPKY 162
Query: 212 KDGDRRDADNGYEKRSPPADSD 233
K DR+ AD G ++ P DS+
Sbjct: 163 K--DRQYADIGRDETPPAPDSE 182
>Os03g0374575 Similar to SC35-like splicing factor SCL30a, 30a kD
Length = 251
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 57/92 (61%), Positives = 76/92 (82%)
Query: 38 SLLVRNIPLSCRAEDLRVPFERFGPVRDVYLPKDYYTGEPRGFAFVEFVDPYDASEAQYH 97
SLLVRN+ CR +DLR PF +FG V+D+YLP+DYYTGEPRGF F+++ DP DA++A+YH
Sbjct: 45 SLLVRNLRRDCRPDDLRRPFGKFGRVKDIYLPRDYYTGEPRGFGFIQYYDPEDAADAKYH 104
Query: 98 MNRQVVFGREITVVLAAESRKRPEEMRSRARV 129
M+ Q++ GRE+TVV A E+RK+P EMR+R RV
Sbjct: 105 MDGQILLGREVTVVFAEENRKKPSEMRARERV 136
>Os07g0633200 Similar to SC35-like splicing factor SCL30a, 30a kD
Length = 213
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 56/94 (59%), Positives = 76/94 (80%)
Query: 38 SLLVRNIPLSCRAEDLRVPFERFGPVRDVYLPKDYYTGEPRGFAFVEFVDPYDASEAQYH 97
SLLVRN+ CR EDLR PF +FG ++D+Y+P+DYY+GEPRGF FV++ DP DA++A+Y+
Sbjct: 39 SLLVRNLRRDCRPEDLRRPFGQFGRLKDIYIPRDYYSGEPRGFGFVQYYDPDDAADAKYY 98
Query: 98 MNRQVVFGREITVVLAAESRKRPEEMRSRARVRG 131
M+ QV+ GRE+ VV A E+RK+P EMRSR R+ G
Sbjct: 99 MDGQVILGREVAVVFAEENRKKPSEMRSRDRISG 132
>Os03g0363800 Similar to SC35-like splicing factor SCL28, 28 kD
Length = 243
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 54/93 (58%), Positives = 72/93 (77%)
Query: 39 LLVRNIPLSCRAEDLRVPFERFGPVRDVYLPKDYYTGEPRGFAFVEFVDPYDASEAQYHM 98
LLVRNI L+ R ED+R+PFE+FGPV+DVYLP++++T E RGF FV+F P DA+ A+ +
Sbjct: 63 LLVRNISLTARPEDIRIPFEQFGPVKDVYLPRNFHTRELRGFGFVKFRYPEDAAVAKQEL 122
Query: 99 NRQVVFGREITVVLAAESRKRPEEMRSRARVRG 131
N QV+ GREI++V A E+RK P+EMR R R G
Sbjct: 123 NHQVIGGREISIVFAEENRKTPQEMRMRTRTSG 155
>Os07g0623300 Similar to Splicing factor SC35
Length = 275
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 48/76 (63%)
Query: 38 SLLVRNIPLSCRAEDLRVPFERFGPVRDVYLPKDYYTGEPRGFAFVEFVDPYDASEAQYH 97
SLLV NI A+DL FE++G V D+Y+P+D TG+ RGFAFV + +A +A
Sbjct: 17 SLLVLNITFRTTADDLSPLFEKYGEVVDIYIPRDRRTGDSRGFAFVRYKYEDEAQKAVDR 76
Query: 98 MNRQVVFGREITVVLA 113
++ +VV GREI V A
Sbjct: 77 LDGRVVDGREIMVQFA 92
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.133 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,422,474
Number of extensions: 250716
Number of successful extensions: 886
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 889
Number of HSP's successfully gapped: 8
Length of query: 265
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 166
Effective length of database: 11,866,615
Effective search space: 1969858090
Effective search space used: 1969858090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 155 (64.3 bits)