BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0572400 Os12g0572400|AK065531
(263 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G55460.1 | chr3:20561024-20563502 FORWARD LENGTH=263 147 5e-36
AT3G13570.1 | chr3:4429564-4431602 REVERSE LENGTH=263 129 2e-30
AT1G55310.3 | chr1:20630676-20632695 FORWARD LENGTH=301 119 2e-27
AT5G18810.1 | chr5:6268925-6271158 REVERSE LENGTH=237 112 1e-25
AT2G21440.1 | chr2:9173712-9179065 REVERSE LENGTH=1004 67 1e-11
AT5G64200.1 | chr5:25681849-25683553 REVERSE LENGTH=304 61 6e-10
AT3G10400.1 | chr3:3232636-3233421 FORWARD LENGTH=262 60 1e-09
AT3G53500.2 | chr3:19834557-19836507 REVERSE LENGTH=285 52 3e-07
AT2G37340.1 | chr2:15670372-15672331 REVERSE LENGTH=291 50 2e-06
AT4G20030.1 | chr4:10846362-10847246 FORWARD LENGTH=153 49 2e-06
AT4G36960.1 | chr4:17427349-17429589 FORWARD LENGTH=380 48 4e-06
>AT3G55460.1 | chr3:20561024-20563502 FORWARD LENGTH=263
Length = 262
Score = 147 bits (371), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 79/91 (86%)
Query: 39 LLVRNIPLSCRGEDLRVPFERFGPVRDVYLPKDYYSGEPRGFAFVEFVDPYDASEAQYHM 98
LLVRNIPL CR E+LR PFERFGPVRDVY+P+DYYSG+PRGFAFVEFVD YDA EAQ M
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSM 108
Query: 99 NRQVFFGREITVVLAAESRKRPEEMRSRARV 129
NR+ F GREITVV+A+ESRKRPEEMR + R
Sbjct: 109 NRRSFAGREITVVVASESRKRPEEMRVKTRT 139
>AT3G13570.1 | chr3:4429564-4431602 REVERSE LENGTH=263
Length = 262
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 56/91 (61%), Positives = 75/91 (82%)
Query: 38 SLLVRNIPLSCRGEDLRVPFERFGPVRDVYLPKDYYSGEPRGFAFVEFVDPYDASEAQYH 97
SLLVRN+ CR EDLR PFE+FGPV+D+YLP+DYY+G+PRGF F++F+DP DA+EA++
Sbjct: 38 SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQ 97
Query: 98 MNRQVFFGREITVVLAAESRKRPEEMRSRAR 128
M+ + GRE+TVV A E+RK+P EMR+R R
Sbjct: 98 MDGYLLLGRELTVVFAEENRKKPTEMRTRDR 128
>AT1G55310.3 | chr1:20630676-20632695 FORWARD LENGTH=301
Length = 300
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/103 (54%), Positives = 75/103 (72%), Gaps = 12/103 (11%)
Query: 38 SLLVRNIPLSCRGEDLRVPFERFGPVRDVYLPKDYYSG------------EPRGFAFVEF 85
SLLVRN+ CR EDLR FE+FGPV+D+YLP+DYY+G +PRGF FV+F
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQF 96
Query: 86 VDPYDASEAQYHMNRQVFFGREITVVLAAESRKRPEEMRSRAR 128
+DP DA++A++HM+ + GRE+TVV A E+RK+P EMR+R R
Sbjct: 97 MDPADAADAKHHMDGYLLLGRELTVVFAEENRKKPTEMRARER 139
>AT5G18810.1 | chr5:6268925-6271158 REVERSE LENGTH=237
Length = 236
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 51/91 (56%), Positives = 67/91 (73%)
Query: 35 GSGSLLVRNIPLSCRGEDLRVPFERFGPVRDVYLPKDYYSGEPRGFAFVEFVDPYDASEA 94
G LL+RN+PL R DLR FERFGP++D+YLP++YY+GEPRGF FV++ DA+EA
Sbjct: 45 GPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEA 104
Query: 95 QYHMNRQVFFGREITVVLAAESRKRPEEMRS 125
MN +V GREI +V A E+RK P+EMR+
Sbjct: 105 MKRMNHKVIGGREIAIVFAEENRKTPQEMRT 135
>AT2G21440.1 | chr2:9173712-9179065 REVERSE LENGTH=1004
Length = 1003
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%)
Query: 39 LLVRNIPLSCRGEDLRVPFERFGPVRDVYLPKDYYSGEPRGFAFVEFVDPYDASEAQYHM 98
L++RN+P + D++V F G V DV++PK++ +G P+GFAFV+F DA+ A
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKF 392
Query: 99 NRQVFFGREITVVLAA 114
N +F R I V A
Sbjct: 393 NGHMFGKRPIAVDWAV 408
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 35 GSGSLLVRNIPLSCRGEDLRVPFERFGPVRDVYLPKDYYSGEPRGFAFVEFVDPYDASEA 94
+ ++ V +P S L F GPVR +L + S E RGFAFV+F D + A
Sbjct: 18 AAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRA 77
Query: 95 QYHMNRQVFFGREITVVLAAESRKRPEEMRSRA 127
N GR ITV AA R +E R++A
Sbjct: 78 IELKNGSTVGGRRITVKQAAH-RPSLQERRTKA 109
>AT5G64200.1 | chr5:25681849-25683553 REVERSE LENGTH=304
Length = 303
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 38 SLLVRNIPLSCRGEDLRVPFERFGPVRDVYLPKDYYSGEPRGFAFVEFVDPYDASEAQYH 97
SLLV NI +DL F ++G V DV++P+D +G+ RGFAFV + +A +A
Sbjct: 17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76
Query: 98 MNRQVFFGREITVVLA 113
++ +V GREITV A
Sbjct: 77 LDGRVVDGREITVQFA 92
>AT3G10400.1 | chr3:3232636-3233421 FORWARD LENGTH=262
Length = 261
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 51/90 (56%)
Query: 38 SLLVRNIPLSCRGEDLRVPFERFGPVRDVYLPKDYYSGEPRGFAFVEFVDPYDASEAQYH 97
+L V N+ S D+ F FG V V + KD ++ + RG AFV +V DA++A
Sbjct: 58 TLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARS 117
Query: 98 MNRQVFFGREITVVLAAESRKRPEEMRSRA 127
M+ ++ GR++TV +AA++ + E ++ R
Sbjct: 118 MDAKILNGRKLTVSIAADNGRASEFIKKRV 147
>AT3G53500.2 | chr3:19834557-19836507 REVERSE LENGTH=285
Length = 284
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Query: 35 GSGSLLVRNIPLSCRGEDLRVPFERFGPVRDVYLPKDYYSGEPRGFAFVEFVDPYDASEA 94
G+ L V + R DL F R+G VRDV + +DY AFVEF DP DA +A
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDY--------AFVEFSDPRDADDA 60
Query: 95 QYHMNRQVFFGREITV 110
+Y+++ + F G ITV
Sbjct: 61 RYYLDGRDFDGSRITV 76
>AT2G37340.1 | chr2:15670372-15672331 REVERSE LENGTH=291
Length = 290
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 35 GSGSLLVRNIPLSCRGEDLRVPFERFGPVRDVYLPKDYYSGEPRGFAFVEFVDPYDASEA 94
G+ L V + R DL F R+G VRDV + +DY AFVEF DP DA +A
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDY--------AFVEFGDPRDADDA 60
Query: 95 QYHMNRQVFFGREITVVLA 113
+++++ + F G ITV +
Sbjct: 61 RHYLDGRDFDGSRITVEFS 79
>AT4G20030.1 | chr4:10846362-10847246 FORWARD LENGTH=153
Length = 152
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 36 SGSLLVRNIPLSCRGEDLRVPFERFGPVRDVYLPKDYYSGEPRGFAFVEFVDPYDASEAQ 95
+ ++VRN+P S + L+ F FG + +V L KD +G+AF++F DA A
Sbjct: 39 ASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAI 98
Query: 96 YHMNRQVFFGREITVVLA 113
M+R+++ GR I + +A
Sbjct: 99 ETMDRRMYNGRMIYIDIA 116
>AT4G36960.1 | chr4:17427349-17429589 FORWARD LENGTH=380
Length = 379
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 39 LLVRNIPLSCRGEDLRVPFERFGPVRDVYLPKDYYSGEPRGFAFVEF 85
+ V IP S D R FER+G + D+Y+PKDY S + RG F+ F
Sbjct: 93 IFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITF 139
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.134 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,867,441
Number of extensions: 145367
Number of successful extensions: 699
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 717
Number of HSP's successfully gapped: 12
Length of query: 263
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 166
Effective length of database: 8,447,217
Effective search space: 1402238022
Effective search space used: 1402238022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 111 (47.4 bits)