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Os02g0730800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.1 (0.0202) R2 : 0.897
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.21 (0.0536) R2dC : 0.417 R2C : 0.0961
β3 : -2.45 (0.0433) R2dE : 0.786 R2E : 0.464
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.242 (0.0425) R2dN8 : 0.00924 R2N8 : 0.0112
σ : 0.379
deviance : 66.35
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C
peak time of C : 20.1
E
wheather : radiation
threshold : 52
memory length : 256
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15
open length of G : 15.5

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
57.86 0.357 12.1 -0.0199 2.22 -2.51 0.328 1.13 -0.235 20.3 52.39 257 15.1 15.3
62.92 0.369 12.1 -0.0347 2.18 -2.52 1.04 -- -0.239 20.3 53.67 257 15.1 15.4
57.99 0.355 12.1 0.00316 2.24 -2.48 -- 1.25 -0.226 20.2 52.73 252 15.1 15.4
66.3 0.379 12.1 -0.0483 2.22 -2.46 -- -- -0.241 20.1 53.53 255 15 15.4
111.13 0.491 12.1 -0.00353 -- -3.07 -- 1.86 -0.479 -- 10.47 544 15.4 14.6
103.68 0.477 12 -0.0914 3.12 -- -0.968 -- -0.291 16.1 -- -- -- --
106.3 0.483 12 -0.102 3.11 -- -- -- -0.296 16.2 -- -- -- --
105.57 0.479 12 -0.181 -- -3.23 -- -- -0.422 -- 112.1 690 14.3 15.6
66.35 0.379 12.1 -- 2.21 -2.45 -- -- -0.242 20.1 52 256 15 15.5
631.08 1.17 12 -0.228 -- -- -- -- -0.379 -- -- -- -- --
106.57 0.483 12 -- 3.11 -- -- -- -0.285 16.2 -- -- -- --
105.23 0.478 12 -- -- -3.22 -- -- -0.335 -- 117.3 696 14.2 15.7
632.45 1.17 12 -- -- -- -- -- -0.354 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 58.98 wind 7.0 270 < th dose independent rect. 6 21
2 59.64 wind 7.0 270 < th dose independent rect. 7 19
4 59.93 radiation 40.0 270 < th dose dependent rect. 15 15
5 60.78 radiation 10.0 270 < th dose independent rect. 2 5
6 60.98 radiation 30.0 270 < th dose independent rect. 15 15
7 61.03 radiation 10.0 270 < th dose independent rect. 3 3
9 61.16 precipitation 0.1 270 < th dose independent rect. 3 3
10 61.16 precipitation 0.1 270 < th dose dependent rect. 3 3
11 61.18 temperature 10.0 270 > th dose dependent rect. 3 3
13 61.38 precipitation 0.1 270 < th dose independent rect. 6 21
14 61.38 precipitation 0.1 270 < th dose dependent rect. 6 21
16 61.44 atmosphere 1010.0 270 < th dose independent rect. 3 3
17 61.44 wind 9.0 270 < th dose independent rect. 6 9
18 61.50 wind 9.0 270 < th dose independent rect. 3 3
19 61.50 temperature 10.0 270 > th dose independent rect. 3 3
21 61.50 temperature 30.0 270 < th dose independent rect. 3 3
22 61.50 humidity 50.0 270 > th dose independent rect. 3 3
25 61.50 atmosphere 995.0 270 > th dose independent rect. 3 3
30 61.50 temperature 10.0 270 > th dose independent rect. 6 21
32 61.52 radiation 40.0 270 < th dose dependent rect. 3 3
35 61.55 radiation 20.0 270 < th dose dependent rect. 2 7
43 62.30 radiation 30.0 270 < th dose dependent rect. 2 5
47 62.40 precipitation 0.1 270 < th dose independent rect. 7 19
50 62.40 precipitation 0.1 270 < th dose dependent rect. 7 19
53 62.50 precipitation 0.1 270 < th dose independent rect. 6 9
54 62.50 precipitation 0.1 270 < th dose dependent rect. 6 9
57 62.55 humidity 70.0 270 > th dose independent rect. 2 5
58 62.56 precipitation 0.1 270 < th dose independent rect. 2 5
59 62.56 precipitation 0.1 270 < th dose dependent rect. 2 5
61 62.62 humidity 50.0 270 > th dose dependent rect. 3 3
68 62.81 wind 9.0 270 < th dose dependent rect. 3 3
69 62.83 temperature 10.0 270 > th dose independent rect. 6 9
70 62.83 atmosphere 1015.0 270 < th dose independent rect. 6 9
71 62.83 temperature 10.0 270 > th dose independent rect. 15 15
73 62.84 wind 9.0 270 < th dose independent rect. 2 5
74 62.84 temperature 10.0 270 > th dose independent rect. 2 5
76 62.84 temperature 30.0 270 < th dose independent rect. 2 5
77 62.84 humidity 50.0 270 > th dose independent rect. 2 5
79 62.84 atmosphere 995.0 270 > th dose independent rect. 2 5
80 62.84 atmosphere 1015.0 270 < th dose independent rect. 2 5
82 62.84 temperature 10.0 270 > th dose independent rect. 7 19
86 63.04 radiation 10.0 270 < th dose dependent rect. 2 17
96 63.44 atmosphere 995.0 270 > th dose independent rect. 6 9
103 63.67 temperature 10.0 270 > th dose dependent rect. 2 5
108 63.74 radiation 10.0 270 < th dose dependent rect. 2 11
113 63.87 humidity 50.0 270 > th dose dependent rect. 2 5
122 63.93 wind 9.0 270 < th dose independent rect. 15 15
145 64.32 atmosphere 1015.0 270 < th dose independent rect. 15 15
173 64.57 radiation 1.0 270 > th dose independent rect. 6 9
188 64.80 wind 9.0 270 < th dose dependent rect. 2 5
196 64.89 atmosphere 995.0 270 > th dose independent rect. 15 15
200 64.90 radiation 10.0 270 < th dose independent rect. 2 17
206 65.06 precipitation 0.1 270 < th dose independent rect. 15 15
207 65.06 precipitation 0.1 270 < th dose dependent rect. 15 15
225 65.32 humidity 50.0 270 > th dose independent rect. 6 9
335 66.20 atmosphere 1015.0 270 < th dose independent rect. 11 10
347 66.30 radiation 10.0 270 < th dose independent rect. 2 11
360 66.43 humidity 50.0 270 > th dose independent rect. 15 15
371 66.49 radiation 40.0 90 < th dose independent rect. 4 18
401 66.65 wind 7.0 270 < th dose independent rect. 20 6
422 66.76 temperature 10.0 270 > th dose independent rect. 20 6
423 66.76 temperature 30.0 270 < th dose independent rect. 20 6
424 66.76 humidity 50.0 270 > th dose independent rect. 20 6
427 66.76 atmosphere 995.0 270 > th dose independent rect. 20 6
428 66.76 radiation 1.0 270 < th dose independent rect. 20 6
433 66.76 temperature 10.0 270 > th dose independent rect. 2 18
434 66.76 atmosphere 1015.0 270 < th dose independent rect. 2 18
436 66.76 radiation 1.0 270 < th dose dependent rect. 20 6
446 66.84 precipitation 0.1 270 < th dose independent rect. 19 7
447 66.84 precipitation 0.1 270 < th dose dependent rect. 19 7
451 66.86 radiation 40.0 270 < th dose independent rect. 11 20
458 66.92 wind 7.0 270 < th dose independent rect. 21 14
494 67.17 atmosphere 1015.0 270 < th dose independent rect. 1 20
513 67.29 radiation 20.0 10 < th dose dependent rect. 5 18
540 67.38 radiation 10.0 10 < th dose independent rect. 5 18
547 67.39 radiation 40.0 90 < th dose dependent rect. 4 18
555 67.44 wind 9.0 270 < th dose dependent rect. 7 19
572 67.58 humidity 50.0 270 > th dose independent rect. 21 14
587 67.67 temperature 10.0 270 > th dose independent rect. 11 10
588 67.67 temperature 10.0 270 > th dose independent rect. 21 14
589 67.67 atmosphere 995.0 270 > th dose independent rect. 21 14
590 67.67 wind 1.0 270 > th dose independent rect. 7 19
651 67.90 precipitation 0.1 270 < th dose independent rect. 2 17
652 67.90 precipitation 0.1 270 < th dose dependent rect. 2 17
653 67.92 precipitation 0.1 270 < th dose independent rect. 21 14
654 67.92 precipitation 0.1 270 < th dose dependent rect. 21 14
657 67.94 atmosphere 995.0 270 > th dose independent rect. 7 19
676 68.06 atmosphere 995.0 270 > th dose independent rect. 2 18
686 68.13 radiation 1.0 270 > th dose independent sin 2 NA
688 68.14 wind 1.0 270 > th dose independent rect. 6 9
693 68.15 wind 9.0 270 < th dose dependent rect. 7 8
694 68.16 wind 7.0 270 < th dose independent rect. 21 4
699 68.22 radiation 20.0 90 < th dose independent rect. 4 18
704 68.25 atmosphere 995.0 270 > th dose dependent rect. 22 3
714 68.30 radiation 40.0 270 < th dose independent rect. 2 17
725 68.34 temperature 10.0 270 > th dose independent rect. 21 4
726 68.34 temperature 30.0 270 < th dose independent rect. 21 4
727 68.34 humidity 50.0 270 > th dose independent rect. 21 4
730 68.34 atmosphere 995.0 270 > th dose independent rect. 21 4
731 68.34 radiation 1.0 270 < th dose independent rect. 21 4
736 68.34 temperature 10.0 270 > th dose independent rect. 1 20
737 68.34 radiation 1.0 270 < th dose dependent rect. 21 4
751 68.38 precipitation 0.1 270 < th dose independent rect. 21 4
753 68.38 precipitation 0.1 270 < th dose dependent rect. 21 4
759 68.41 atmosphere 995.0 270 > th dose dependent rect. 21 5
818 68.61 wind 9.0 270 < th dose independent rect. 2 18
860 68.75 radiation 40.0 90 < th dose dependent rect. 3 20
903 68.83 wind 1.0 270 > th dose independent rect. 11 10
904 68.83 atmosphere 995.0 270 > th dose independent rect. 6 21
905 68.85 atmosphere 995.0 270 > th dose dependent rect. 3 3
978 69.22 humidity 50.0 270 > th dose independent rect. 2 17