BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0730800 Os02g0730800|AK066980
(399 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0730800 RNA-binding region RNP-1 (RNA recognition moti... 703 0.0
Os06g0116600 Proteinase inhibitor, propeptide domain contai... 95 1e-19
Os03g0278800 RNA-binding region RNP-1 (RNA recognition moti... 90 4e-18
Os07g0549800 Similar to RGP-3 (Fragment) 81 1e-15
Os12g0502200 Similar to Low temperature-responsive RNA-bind... 75 1e-13
Os08g0139000 Similar to RNA-binding glycine rich protein (R... 74 1e-13
Os07g0602600 Similar to RNA binding protein 73 3e-13
Os12g0632000 Similar to Glycine-rich RNA-binding protein 1 ... 73 4e-13
Os08g0139100 Similar to DAG protein, chloroplast precursor 72 1e-12
Os10g0321700 Similar to Ribonucleoprotein like protein 71 2e-12
Os03g0836200 Similar to RNA-binding protein RZ-1 70 2e-12
Os04g0682400 RNA-binding region RNP-1 (RNA recognition moti... 68 1e-11
Os03g0670700 Similar to Glycine-rich RNA-binding, abscisic ... 68 1e-11
Os01g0974600 Similar to RNA-binding glycine rich protein (R... 67 2e-11
AK111046 67 2e-11
Os09g0509000 Conserved hypothetical protein 65 7e-11
>Os02g0730800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 399
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/368 (92%), Positives = 339/368 (92%)
Query: 32 IPHLSPHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHCSRWVVVMERPPAPAGGGEVSR 91
IPHLSPHT HCSRWVVVMERPPAPAGGGEVSR
Sbjct: 32 IPHLSPHTRRRRQRRFLRLASAAASSPPPLPAASAQPHCSRWVVVMERPPAPAGGGEVSR 91
Query: 92 AEAVDHYVATLARVLGSQEEAQMRIYDASWDGSYEFSCEIDDEASRDLAKMPGVLAVKPD 151
AEAVDHYVATLARVLGSQEEAQMRIYDASWDGSYEFSCEIDDEASRDLAKMPGVLAVKPD
Sbjct: 92 AEAVDHYVATLARVLGSQEEAQMRIYDASWDGSYEFSCEIDDEASRDLAKMPGVLAVKPD 151
Query: 152 TDKVDMSEKDNHGSGLSAANLGNFSDAVSNHSSSSGENEFWLVRMEKPGVEVVTKAQMVD 211
TDKVDMSEKDNHGSGLSAANLGNFSDAVSNHSSSSGENEFWLVRMEKPGVEVVTKAQMVD
Sbjct: 152 TDKVDMSEKDNHGSGLSAANLGNFSDAVSNHSSSSGENEFWLVRMEKPGVEVVTKAQMVD 211
Query: 212 HYTQTLMKVLGNEKDAQVSIYHISWERDYGFCCHIDEECAKELADVSGVLSVQPDTNFGS 271
HYTQTLMKVLGNEKDAQVSIYHISWERDYGFCCHIDEECAKELADVSGVLSVQPDTNFGS
Sbjct: 212 HYTQTLMKVLGNEKDAQVSIYHISWERDYGFCCHIDEECAKELADVSGVLSVQPDTNFGS 271
Query: 272 DNKNYKGDDSFKSSEATQAEVKTKRLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKI 331
DNKNYKGDDSFKSSEATQAEVKTKRLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKI
Sbjct: 272 DNKNYKGDDSFKSSEATQAEVKTKRLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKI 331
Query: 332 SKRSKGYAFIEYTTEEAGGAALKAMNGQIINGWMIVVDVAKHRSRDRQPPYSASGRSNQV 391
SKRSKGYAFIEYTTEEAGGAALKAMNGQIINGWMIVVDVAKHRSRDRQPPYSASGRSNQV
Sbjct: 332 SKRSKGYAFIEYTTEEAGGAALKAMNGQIINGWMIVVDVAKHRSRDRQPPYSASGRSNQV 391
Query: 392 LRSRYHTG 399
LRSRYHTG
Sbjct: 392 LRSRYHTG 399
>Os06g0116600 Proteinase inhibitor, propeptide domain containing protein
Length = 165
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 190 EFWLVRMEKPGVEVVTKAQMVDHYTQTLMKVLGNEKDAQVSIYHISWERDYGFCCHIDEE 249
E WL+ M+KPG E TK QM+D Y QTL KVLG+E++A+ IY++S ER +GF C IDEE
Sbjct: 31 EHWLIVMDKPGGEGATKQQMIDCYIQTLAKVLGSEEEAKKKIYNVSCERYFGFGCEIDEE 90
Query: 250 CAKELADVSGVLSVQPDTNFGSDNKNYKGDDSFKSSEATQAEVKTKR 296
+ +L + GVL V PD+ + K+Y G + F + E Q + +R
Sbjct: 91 TSNKLEGLPGVLFVLPDSYVDPEYKDY-GAELFVNGEIVQRSPERQR 136
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 63/95 (66%), Gaps = 6/95 (6%)
Query: 73 WVVVMERPPAPAGGGEVSRAEAVDHYVATLARVLGSQEEAQMRIYDASWDGSYEFSCEID 132
W++VM++P GG ++ + +D Y+ TLA+VLGS+EEA+ +IY+ S + + F CEID
Sbjct: 33 WLIVMDKP----GGEGATKQQMIDCYIQTLAKVLGSEEEAKKKIYNVSCERYFGFGCEID 88
Query: 133 DEASRDLAKMPGVLAVKPDTDKVDMSEKDNHGSGL 167
+E S L +PGVL V PD+ VD KD +G+ L
Sbjct: 89 EETSNKLEGLPGVLFVLPDS-YVDPEYKD-YGAEL 121
>Os03g0278800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 173
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 58/85 (68%)
Query: 296 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKA 355
+LF++GLS T+++ L+ AF PFG+L+E K+I D+IS RSKG+ F+ Y T E A +
Sbjct: 68 KLFISGLSRLTTDEKLKNAFAPFGQLLEAKVITDRISGRSKGFGFVRYATLEEAENARQE 127
Query: 356 MNGQIINGWMIVVDVAKHRSRDRQP 380
MN + ++GW+I VD AK R + P
Sbjct: 128 MNAKFLDGWVIFVDPAKPRQQKPAP 152
>Os07g0549800 Similar to RGP-3 (Fragment)
Length = 133
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 297 LFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKAM 356
LFV+GL+ T+ LR AF FG+++E ++I D+IS S+G+ F++Y T E G +K M
Sbjct: 37 LFVSGLNKRTTSDGLREAFSKFGQVIEARVITDRISGYSRGFGFVKYATVEEAGEGIKGM 96
Query: 357 NGQIINGWMIVVDVAKHRSRDRQPPYSASGRSNQ 390
+G+ ++GW+I + AK R +QP A+ S Q
Sbjct: 97 DGKFLDGWVIFAEYAKQRE-AQQPAQPAASTSYQ 129
>Os12g0502200 Similar to Low temperature-responsive RNA-binding protein
Length = 258
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 56/84 (66%)
Query: 292 VKTKRLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGA 351
+ + +LFV GLS+ T E++LR F +G+++E KII D+ + RS+G+ FI Y + E A
Sbjct: 28 MSSSKLFVGGLSYGTDEQSLRDTFANYGQVIEAKIINDRETGRSRGFGFITYASSEEASA 87
Query: 352 ALKAMNGQIINGWMIVVDVAKHRS 375
A+ A++G+ ++G I V+ A R+
Sbjct: 88 AITALDGKDLDGRNIRVNTANERT 111
>Os08g0139000 Similar to RNA-binding glycine rich protein (RGP-2)
Length = 141
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 54/84 (64%)
Query: 297 LFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKAM 356
LF++GLS T+ L+ AF FGE++ +++ D+++ SKG+ F+ Y T E ++ M
Sbjct: 38 LFISGLSKRTTTDGLKEAFAKFGEVIHARVVTDRVTGFSKGFGFVRYATVEDAAKGIEGM 97
Query: 357 NGQIINGWMIVVDVAKHRSRDRQP 380
+G+ ++GW+I + A+ R+ +QP
Sbjct: 98 DGKFLDGWVIFAEYARPRTPPQQP 121
>Os07g0602600 Similar to RNA binding protein
Length = 238
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 53/79 (67%)
Query: 294 TKRLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAAL 353
+ +LFV GLS+ T + TL+ F +G+++E +II+D+ + +SKGY FI YT+ E AA+
Sbjct: 30 SSKLFVGGLSYATDDTTLKDVFSHYGDVLEARIIIDRDTGKSKGYGFITYTSSEEAAAAV 89
Query: 354 KAMNGQIINGWMIVVDVAK 372
AM+G+ + G ++ V A
Sbjct: 90 TAMDGKDLQGRIVRVSTAN 108
>Os12g0632000 Similar to Glycine-rich RNA-binding protein 1 (Fragment)
Length = 162
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 56/79 (70%)
Query: 296 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKA 355
R FV GL++ T +++L AAF FGE++E KII D+ + RS+G+ F+ +++E+A A++
Sbjct: 9 RCFVGGLAWATDDRSLEAAFSTFGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEG 68
Query: 356 MNGQIINGWMIVVDVAKHR 374
MNG+ ++G I V+ A+ R
Sbjct: 69 MNGKELDGRNITVNEAQSR 87
>Os08g0139100 Similar to DAG protein, chloroplast precursor
Length = 229
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 51/88 (57%)
Query: 192 WLVRMEKPGVEVVTKAQMVDHYTQTLMKVLGNEKDAQVSIYHISWERDYGFCCHIDEECA 251
WL+ ME P T+ QM+D Y TL VLG+ ++A+ ++Y S GF C +DEE +
Sbjct: 86 WLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVDEETS 145
Query: 252 KELADVSGVLSVQPDTNFGSDNKNYKGD 279
++ + GVL V PD+ NK+Y GD
Sbjct: 146 EKFKGLPGVLWVLPDSYIDVKNKDYGGD 173
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 5/92 (5%)
Query: 73 WVVVMERPPAPAGGGEVSRAEAVDHYVATLARVLGSQEEAQMRIYDASWDGSYEFSCEID 132
W++VME P PA +R + +D Y+ TLA VLGS EEA+ +Y S F C +D
Sbjct: 86 WLIVMEFPKDPAP----TREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVD 141
Query: 133 DEASRDLAKMPGVLAVKPDTDKVDMSEKDNHG 164
+E S +PGVL V PD+ +D+ KD G
Sbjct: 142 EETSEKFKGLPGVLWVLPDS-YIDVKNKDYGG 172
>Os10g0321700 Similar to Ribonucleoprotein like protein
Length = 317
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 55/80 (68%)
Query: 292 VKTKRLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGA 351
+ + +LF+ G+S+ T +++L+ AF +GE++E ++I+D+ + RS+G+ F+ YT+ + A
Sbjct: 28 MSSSKLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAA 87
Query: 352 ALKAMNGQIINGWMIVVDVA 371
A+ M+G+ + G ++ V A
Sbjct: 88 AITGMDGKDLQGRIVRVSYA 107
>Os03g0836200 Similar to RNA-binding protein RZ-1
Length = 205
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Query: 290 AEVKTKRLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAG 349
A+V+ R F+ LS+ T++++L+ AF FG L E K++ DK S RS+G+ F+ + ++A
Sbjct: 2 ADVEEYRCFIGNLSWSTTDESLKDAFGKFGNLTEAKVVFDKYSGRSRGFGFVTFDEKKAM 61
Query: 350 GAALKAMNGQIINGWMIVVDVAKHR--SRDRQ 379
A++ MNG ++G I VD A+ + RDR
Sbjct: 62 EDAIEGMNGLDLDGRAITVDKAQPQGPGRDRN 93
>Os04g0682400 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 1008
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 127/323 (39%), Gaps = 53/323 (16%)
Query: 80 PPA-PAGGGEVSRAEAVDHYVATLARVLGSQEEAQM----------RIYDASWDG---SY 125
PP+ P GG++ + + YV L +GS + ++ R+ D + G Y
Sbjct: 277 PPSFPQDGGKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGY 336
Query: 126 EFSCEIDDE-ASRDLAKMPGVLAVKPDTDKVDMSEKDNHGSGLSAANLGNFSDAVSNHSS 184
F D AS + +M G L G+ L G F + N
Sbjct: 337 GFVKYSDPRCASEAIKRMNGRLV---------------EGTALKVRVTG-FPSSEDNSQQ 380
Query: 185 SSGENEFWLVRMEKPGVEVVTKAQMVDHYTQTLMKVLGNEKDAQVSIYHIS-WERDYGFC 243
S E + M K V ++ + D + G +A+V+ H + + YGF
Sbjct: 381 PSKETD-----MAKLYVCNLSLSMNTDRLIHLFLP-FGEVTNAKVAKDHTTGLSKGYGFV 434
Query: 244 CHIDEECAKE--------LAD-------VSGVLSVQPDTNFGSDNKNYKGDDSFKSSEAT 288
+ A E L D VSG+ S P++ S + S+ T
Sbjct: 435 QYSSPHHAAEAVIHLNGRLVDGRKIEVRVSGIPSTLPNSAVESPSTTRNSAVESPSTTRT 494
Query: 289 QAEVKTKRLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEA 348
E+ L+V + K L F PFG++ +++ D + +KGY FI++T E+
Sbjct: 495 VKEIDMSNLYVCNMPSSIDTKKLVELFLPFGKITHARVVADPDTFSAKGYGFIKFTDSES 554
Query: 349 GGAALKAMNGQIINGWMIVVDVA 371
A+ AMNG ++ G MI+V VA
Sbjct: 555 ATKAIAAMNGALVGGEMIIVRVA 577
>Os03g0670700 Similar to Glycine-rich RNA-binding, abscisic acid-inducible
protein
Length = 196
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 56/79 (70%)
Query: 296 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKA 355
R FV GL++ T +++L AAF +GE+++ KII D+ + RS+G+ F+ +++E++ A++
Sbjct: 9 RCFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSMRDAIEG 68
Query: 356 MNGQIINGWMIVVDVAKHR 374
MNG+ ++G I V+ A+ R
Sbjct: 69 MNGKELDGRNITVNEAQSR 87
>Os01g0974600 Similar to RNA-binding glycine rich protein (RGP-2)
Length = 116
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 50/76 (65%)
Query: 296 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKA 355
+LF+ GLS+ T+E L+ AF G +++VK+I ++ +SKGY F+++ +E+ AAL
Sbjct: 38 KLFIGGLSYDTNETALKDAFSQHGHIIQVKVICHPVTGKSKGYGFVKFASEDEAAAALHK 97
Query: 356 MNGQIINGWMIVVDVA 371
M G++I+G I V A
Sbjct: 98 MGGEVIDGRNIRVHYA 113
>AK111046
Length = 231
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 56/79 (70%)
Query: 296 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKA 355
R FV GL++ T +++L AAF +GE+++ KII D+ + RS+G+ F+ +++E++ A++
Sbjct: 9 RCFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSMRDAIEG 68
Query: 356 MNGQIINGWMIVVDVAKHR 374
MNG+ ++G I V+ A+ R
Sbjct: 69 MNGKELDGRNITVNEAQSR 87
>Os09g0509000 Conserved hypothetical protein
Length = 396
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 73 WVVVMERPPAPAGGGEVSRAEAVDHYVATLARVLGSQEEAQMRIYDASWDGSYEFSCEID 132
W+VV+E PP E +R E +D Y+ TLA+V+GS+EEA+ +IY S + F +
Sbjct: 89 WLVVVEPPPGDPSNPEPTRDEIIDGYIKTLAQVVGSEEEARHKIYSVSTRHYFAFGALVS 148
Query: 133 DEASRDLAKMPGVLAVKPDTDKVDMSEKDNHG 164
+E S L ++P V V PD+ +D+ KD G
Sbjct: 149 EELSYKLKELPKVRWVLPDS-YLDVRNKDYGG 179
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.130 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,050,229
Number of extensions: 466742
Number of successful extensions: 1337
Number of sequences better than 1.0e-10: 17
Number of HSP's gapped: 1344
Number of HSP's successfully gapped: 19
Length of query: 399
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 296
Effective length of database: 11,657,759
Effective search space: 3450696664
Effective search space used: 3450696664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)