Os09g0509000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os09g0509000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.54 | 0.306 | 13.3 | 0.271 | 1.18 | 1.17 | 0.317 | -1.78 | -0.192 | 18.8 | 24.93 | 85 | -- | -- |
| 43.76 | 0.308 | 13.2 | 0.483 | 1.19 | 1.01 | 0.199 | -- | -0.151 | 18.8 | 24.51 | 82 | -- | -- |
| 42.78 | 0.305 | 13.3 | 0.279 | 1.17 | 1.18 | -- | -1.65 | -0.19 | 18.9 | 24.91 | 84 | -- | -- |
| 43.85 | 0.308 | 13.2 | 0.476 | 1.18 | 1.02 | -- | -- | -0.154 | 18.8 | 24.47 | 82 | -- | -- |
| 85.03 | 0.429 | 13.3 | 0.0441 | -- | 1.95 | -- | -1.52 | -0.331 | -- | 24.43 | 316 | -- | -- |
| 60.25 | 0.364 | 13.2 | 0.657 | 1.5 | -- | 0.592 | -- | -0.0486 | 18 | -- | -- | -- | -- |
| 61.11 | 0.366 | 13.2 | 0.652 | 1.5 | -- | -- | -- | -0.0464 | 18 | -- | -- | -- | -- |
| 87.62 | 0.436 | 13.2 | 0.32 | -- | 1.78 | -- | -- | -0.246 | -- | 24.4 | 324 | -- | -- |
| 49.48 | 0.328 | 13.3 | -- | 1.14 | 1.14 | -- | -- | -0.233 | 18.9 | 24.08 | 87 | -- | -- |
| 178.44 | 0.624 | 13.2 | 0.608 | -- | -- | -- | -- | -0.0807 | -- | -- | -- | -- | -- |
| 72.32 | 0.398 | 13.2 | -- | 1.49 | -- | -- | -- | -0.119 | 18 | -- | -- | -- | -- |
| 90.2 | 0.442 | 13.2 | -- | -- | 1.82 | -- | -- | -0.291 | -- | 24.3 | 323 | -- | -- |
| 188.19 | 0.64 | 13.2 | -- | -- | -- | -- | -- | -0.148 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.57 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 7 | 40.43 | temperature | 30 | 90 | < th | dose dependent | sin | 23 | NA |
| 8 | 40.52 | temperature | 15 | 90 | > th | dose dependent | sin | 0 | NA |
| 9 | 40.53 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 18 | 40.75 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 14 |
| 20 | 40.81 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 16 |
| 27 | 40.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 33 | 40.94 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 21 |
| 206 | 42.15 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 9 |
| 221 | 42.27 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 4 |
| 225 | 42.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 17 |
| 244 | 42.43 | temperature | 25 | 90 | > th | dose dependent | rect. | 2 | 22 |
| 256 | 42.49 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 281 | 42.56 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 402 | 42.84 | temperature | 25 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 426 | 42.91 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 478 | 43.01 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 559 | 43.22 | temperature | 25 | 90 | > th | dose dependent | rect. | 16 | 23 |
| 709 | 43.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 2 |
| 750 | 43.92 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 5 |
| 795 | 44.06 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 839 | 44.24 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 10 |