Os03g0265600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transformer-2-like protein.
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Os03g0265600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transformer-2-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97.65 | 0.464 | 11.5 | -0.329 | 2.1 | 2.94 | 1 | 1.19 | 0.265 | 9.17 | 14.86 | 9 | -- | -- |
| 98.72 | 0.466 | 11.5 | -0.489 | 2.09 | 2.96 | 1.19 | -- | 0.227 | 9.23 | 14.86 | 9 | -- | -- |
| 100.69 | 0.467 | 11.5 | -0.203 | 2.09 | 3 | -- | 1.9 | 0.292 | 9.14 | 14.05 | 6 | -- | -- |
| 103.74 | 0.474 | 11.5 | -0.463 | 2.08 | 3.04 | -- | -- | 0.219 | 9.19 | 13.76 | 6 | -- | -- |
| 344.63 | 0.869 | 11.6 | -0.398 | -- | 3.78 | -- | 1.48 | 0.188 | -- | 14.05 | 6 | -- | -- |
| 183.47 | 0.635 | 11.4 | 0.0718 | 2.43 | -- | 1.34 | -- | 0.642 | 10.5 | -- | -- | -- | -- |
| 190.86 | 0.647 | 11.4 | 0.125 | 2.43 | -- | -- | -- | 0.645 | 10.5 | -- | -- | -- | -- |
| 345.67 | 0.87 | 11.6 | -0.575 | -- | 3.4 | -- | -- | 0.134 | -- | 16.91 | 4 | -- | -- |
| 108.68 | 0.488 | 11.5 | -- | 2.1 | 2.77 | -- | -- | 0.3 | 9.29 | 14.85 | 7 | -- | -- |
| 552.36 | 1.1 | 11.5 | 0.0823 | -- | -- | -- | -- | 0.635 | -- | -- | -- | -- | -- |
| 191.27 | 0.647 | 11.4 | -- | 2.43 | -- | -- | -- | 0.632 | 10.5 | -- | -- | -- | -- |
| 353.27 | 0.878 | 11.6 | -- | -- | 3.04 | -- | -- | 0.218 | -- | 18.38 | 5 | -- | -- |
| 552.53 | 1.1 | 11.5 | -- | -- | -- | -- | -- | 0.626 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 95.81 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 2 | 96.87 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 3 | 97.76 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 5 | 97.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 6 | 98.30 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 22 |
| 7 | 98.47 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 8 | 98.69 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 11 | 98.89 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 13 | 98.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 23 |
| 17 | 99.53 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 21 | 99.94 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 25 | 100.18 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 41 | 101.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 47 | 101.76 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 48 | 101.84 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 53 | 102.91 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 68 | 104.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 20 |
| 70 | 104.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 74 | 105.13 | temperature | 10 | 10 | > th | dose dependent | sin | 4 | NA |
| 90 | 106.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 91 | 106.05 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 107 | 106.46 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 109 | 106.51 | temperature | 30 | 10 | < th | dose dependent | sin | 4 | NA |
| 136 | 107.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 195 | 109.46 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 558 | 118.94 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 570 | 119.15 | temperature | 25 | 90 | < th | dose independent | rect. | 23 | 22 |
| 675 | 120.57 | temperature | 20 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 718 | 121.22 | temperature | 25 | 30 | > th | dose independent | rect. | 20 | 23 |
| 900 | 123.65 | temperature | 25 | 90 | < th | dose independent | rect. | 21 | 23 |
| 946 | 124.27 | temperature | 25 | 90 | < th | dose independent | rect. | 9 | 23 |
| 967 | 124.46 | temperature | 25 | 30 | < th | dose independent | rect. | 1 | 23 |
| 969 | 124.49 | temperature | 25 | 90 | > th | dose independent | rect. | 4 | 23 |
| 989 | 124.74 | temperature | 25 | 30 | > th | dose independent | rect. | 5 | 21 |