BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0265600 Os03g0265600|AK065578
(125 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0265600 Similar to Transformer-2-like protein 187 1e-48
Os08g0385900 Similar to Transformer-2-like protein 119 8e-28
Os06g0724600 Similar to Transformer-SR ribonucleoprotein (F... 109 6e-25
Os01g0367300 RNA-binding region RNP-1 (RNA recognition moti... 73 5e-14
Os07g0549800 Similar to RGP-3 (Fragment) 67 3e-12
Os09g0565200 Similar to Nucleic acid-binding protein precursor 64 2e-11
Os08g0139000 Similar to RNA-binding glycine rich protein (R... 63 4e-11
>Os03g0265600 Similar to Transformer-2-like protein
Length = 125
Score = 187 bits (476), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 98/125 (78%), Positives = 98/125 (78%)
Query: 1 MSYSRGSRYEXXXXXXXXXXXXXXXXXXXXXXXXXXXVENPGNNLYVTGLSARVTDRDLE 60
MSYSRGSRYE VENPGNNLYVTGLSARVTDRDLE
Sbjct: 1 MSYSRGSRYESDSYSTSPRRSSRSRYRSRSRSVDSSDVENPGNNLYVTGLSARVTDRDLE 60
Query: 61 KHFSAEGEVIDASIVLDPWTRESRGFGFVTMATVKEADLCIKYLDRSVLEGRVITVEKLL 120
KHFSAEGEVIDASIVLDPWTRESRGFGFVTMATVKEADLCIKYLDRSVLEGRVITVEKLL
Sbjct: 61 KHFSAEGEVIDASIVLDPWTRESRGFGFVTMATVKEADLCIKYLDRSVLEGRVITVEKLL 120
Query: 121 LTAAG 125
LTAAG
Sbjct: 121 LTAAG 125
>Os08g0385900 Similar to Transformer-2-like protein
Length = 279
Score = 119 bits (297), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 65/83 (78%)
Query: 40 NPGNNLYVTGLSARVTDRDLEKHFSAEGEVIDASIVLDPWTRESRGFGFVTMATVKEADL 99
NPGNNLYVTGLS RVT+ DLEK FS EG+V +VLDP T+ESRGF FVTM +V +A
Sbjct: 88 NPGNNLYVTGLSTRVTEEDLEKFFSKEGKVQSCHVVLDPRTKESRGFAFVTMDSVDDARR 147
Query: 100 CIKYLDRSVLEGRVITVEKLLLT 122
CIKYL R+VLEGR++TVEK T
Sbjct: 148 CIKYLHRTVLEGRLVTVEKAKRT 170
>Os06g0724600 Similar to Transformer-SR ribonucleoprotein (Fragment)
Length = 164
Score = 109 bits (272), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 65/82 (79%)
Query: 40 NPGNNLYVTGLSARVTDRDLEKHFSAEGEVIDASIVLDPWTRESRGFGFVTMATVKEADL 99
N GN LYVTGLS+RVT+R+L+ +FS EG V +VL+P TR SRGF FVTM TV++A+
Sbjct: 62 NHGNTLYVTGLSSRVTERELKDYFSKEGRVTSCHVVLEPHTRVSRGFAFVTMDTVEDAER 121
Query: 100 CIKYLDRSVLEGRVITVEKLLL 121
CIKYL++SV+EGR ITVEK L
Sbjct: 122 CIKYLNQSVMEGRNITVEKKRL 143
>Os01g0367300 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 698
Score = 72.8 bits (177), Expect = 5e-14, Method: Composition-based stats.
Identities = 36/78 (46%), Positives = 49/78 (62%)
Query: 41 PGNNLYVTGLSARVTDRDLEKHFSAEGEVIDASIVLDPWTRESRGFGFVTMATVKEADLC 100
PG NL+V G S T+RDLEK FS G V A +V D + +SRGFGF+++ ++AD
Sbjct: 615 PGRNLFVAGFSYATTERDLEKKFSKYGRVTSARVVRDKRSGDSRGFGFLSLEKDEDADAA 674
Query: 101 IKYLDRSVLEGRVITVEK 118
I+ D + GR+I VEK
Sbjct: 675 IRACDETEWNGRIILVEK 692
>Os07g0549800 Similar to RGP-3 (Fragment)
Length = 133
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 48/75 (64%)
Query: 43 NNLYVTGLSARVTDRDLEKHFSAEGEVIDASIVLDPWTRESRGFGFVTMATVKEADLCIK 102
NNL+V+GL+ R T L + FS G+VI+A ++ D + SRGFGFV ATV+EA IK
Sbjct: 35 NNLFVSGLNKRTTSDGLREAFSKFGQVIEARVITDRISGYSRGFGFVKYATVEEAGEGIK 94
Query: 103 YLDRSVLEGRVITVE 117
+D L+G VI E
Sbjct: 95 GMDGKFLDGWVIFAE 109
>Os09g0565200 Similar to Nucleic acid-binding protein precursor
Length = 322
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 45/76 (59%)
Query: 41 PGNNLYVTGLSARVTDRDLEKHFSAEGEVIDASIVLDPWTRESRGFGFVTMATVKEADLC 100
P +YV L +V D L + FS G+V+DA +V D T SRGFGFVTMAT +E D
Sbjct: 235 PSFRIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQEELDDA 294
Query: 101 IKYLDRSVLEGRVITV 116
I LD L+GR + V
Sbjct: 295 IAALDGQSLDGRALRV 310
>Os08g0139000 Similar to RNA-binding glycine rich protein (RGP-2)
Length = 141
Score = 63.2 bits (152), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 40 NPGNNLYVTGLSARVTDRDLEKHFSAEGEVIDASIVLDPWTRESRGFGFVTMATVKEADL 99
+P NL+++GLS R T L++ F+ GEVI A +V D T S+GFGFV ATV++A
Sbjct: 33 DPSPNLFISGLSKRTTTDGLKEAFAKFGEVIHARVVTDRVTGFSKGFGFVRYATVEDAAK 92
Query: 100 CIKYLDRSVLEGRVITVE 117
I+ +D L+G VI E
Sbjct: 93 GIEGMDGKFLDGWVIFAE 110
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,810,556
Number of extensions: 83021
Number of successful extensions: 411
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 416
Number of HSP's successfully gapped: 8
Length of query: 125
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 37
Effective length of database: 12,440,969
Effective search space: 460315853
Effective search space used: 460315853
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 149 (62.0 bits)