Os08g0385900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transformer-2-like protein.
FiT-DB / Search/ Help/ Sample detail
|
Os08g0385900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Transformer-2-like protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.22 | 0.171 | 11.8 | 0.343 | 0.555 | 0.87 | 0.699 | 0.783 | 0.23 | 13.6 | 20.72 | 1219 | -- | -- |
| 13.73 | 0.173 | 11.8 | 0.297 | 0.541 | 0.676 | 0.617 | -- | 0.173 | 13.5 | 21.88 | 1158 | -- | -- |
| 14.71 | 0.179 | 11.8 | 0.398 | 0.574 | 0.823 | -- | 0.632 | 0.204 | 13.5 | 21.2 | 1203 | -- | -- |
| 15.21 | 0.182 | 11.8 | 0.267 | 0.571 | 0.687 | -- | -- | 0.174 | 13.4 | 21.9 | 1138 | -- | -- |
| 31.23 | 0.26 | 11.8 | 0.415 | -- | 0.782 | -- | 0.776 | 0.217 | -- | 21.4 | 1559 | -- | -- |
| 29.96 | 0.257 | 11.8 | 0.509 | 0.491 | -- | 0.69 | -- | 0.385 | 13.7 | -- | -- | -- | -- |
| 31.82 | 0.264 | 11.8 | 0.531 | 0.491 | -- | -- | -- | 0.389 | 13.6 | -- | -- | -- | -- |
| 32.48 | 0.265 | 11.8 | 0.24 | -- | 0.647 | -- | -- | 0.165 | -- | 21.7 | 1541 | -- | -- |
| 16.78 | 0.191 | 11.8 | -- | 0.588 | 0.76 | -- | -- | 0.142 | 13.4 | 21.7 | 1156 | -- | -- |
| 46.52 | 0.319 | 11.8 | 0.511 | -- | -- | -- | -- | 0.378 | -- | -- | -- | -- | -- |
| 39.24 | 0.293 | 11.8 | -- | 0.481 | -- | -- | -- | 0.33 | 13.6 | -- | -- | -- | -- |
| 33.32 | 0.269 | 11.8 | -- | -- | 0.789 | -- | -- | 0.144 | -- | 21.4 | 1592 | -- | -- |
| 53.41 | 0.341 | 11.8 | -- | -- | -- | -- | -- | 0.321 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.79 | temperature | 25 | 720 | < th | dose dependent | sin | 1 | NA |
| 2 | 12.84 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 17 |
| 11 | 13.09 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 13 | 13.15 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 14 |
| 21 | 13.26 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 16 |
| 30 | 13.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 17 |
| 45 | 13.54 | temperature | 10 | 720 | > th | dose dependent | sin | 5 | NA |
| 58 | 13.66 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 72 | 13.80 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 10 |
| 110 | 14.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 118 | 14.04 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 141 | 14.14 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 17 |
| 203 | 14.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 10 |
| 217 | 14.32 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 218 | 14.32 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 219 | 14.33 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 8 |
| 221 | 14.33 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 246 | 14.36 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 251 | 14.37 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 282 | 14.43 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 283 | 14.44 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 10 |
| 310 | 14.48 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 353 | 14.55 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 363 | 14.56 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 378 | 14.59 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 381 | 14.59 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 392 | 14.61 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 445 | 14.69 | temperature | 20 | 90 | > th | dose dependent | rect. | 5 | 19 |
| 462 | 14.72 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 478 | 14.73 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 482 | 14.74 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 494 | 14.74 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 625 | 14.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 628 | 14.89 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 647 | 14.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 686 | 14.94 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 689 | 14.94 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 17 |
| 703 | 14.96 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 7 |
| 976 | 15.15 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 981 | 15.15 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |