BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0385900 Os08g0385900|AK070807
         (279 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0385900  Similar to Transformer-2-like protein               244   5e-65
Os06g0724600  Similar to Transformer-SR ribonucleoprotein (F...   125   5e-29
Os03g0265600  Similar to Transformer-2-like protein               117   1e-26
Os01g0367300  RNA-binding region RNP-1 (RNA recognition moti...    78   5e-15

>Os08g0385900 Similar to Transformer-2-like protein
          Length = 279

 Score =  244 bits (623), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 124/182 (68%), Positives = 124/182 (68%)

Query: 1   MSQSKEVRYTARSITPPADRNGTSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MSQSKEVRYTARSITPPADRNGTSK                                   
Sbjct: 1   MSQSKEVRYTARSITPPADRNGTSKSKSPTPVRRSTSRSPPPKKSDSRSPPPRRRSTSRS 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXDDLRNPGNNLYVTGLSTRVTEEDLEKFFSKEGKVQSC 120
                                  DDLRNPGNNLYVTGLSTRVTEEDLEKFFSKEGKVQSC
Sbjct: 61  PRPRRHGRSRSRSRDRSRSRSRDDDLRNPGNNLYVTGLSTRVTEEDLEKFFSKEGKVQSC 120

Query: 121 HVVLDPRTKESRGFAFVTMDSVDDARRCIKYLHRTVLEGRLVTVEKAKRTRERTPTPGKY 180
           HVVLDPRTKESRGFAFVTMDSVDDARRCIKYLHRTVLEGRLVTVEKAKRTRERTPTPGKY
Sbjct: 121 HVVLDPRTKESRGFAFVTMDSVDDARRCIKYLHRTVLEGRLVTVEKAKRTRERTPTPGKY 180

Query: 181 CG 182
           CG
Sbjct: 181 CG 182



>Os06g0724600 Similar to Transformer-SR ribonucleoprotein (Fragment)
          Length = 164

 Score =  125 bits (313), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 57/84 (67%), Positives = 72/84 (85%)

Query: 85  DLRNPGNNLYVTGLSTRVTEEDLEKFFSKEGKVQSCHVVLDPRTKESRGFAFVTMDSVDD 144
           D  N GN LYVTGLS+RVTE +L+ +FSKEG+V SCHVVL+P T+ SRGFAFVTMD+V+D
Sbjct: 59  DAVNHGNTLYVTGLSSRVTERELKDYFSKEGRVTSCHVVLEPHTRVSRGFAFVTMDTVED 118

Query: 145 ARRCIKYLHRTVLEGRLVTVEKAK 168
           A RCIKYL+++V+EGR +TVEK +
Sbjct: 119 AERCIKYLNQSVMEGRNITVEKKR 142



>Os03g0265600 Similar to Transformer-2-like protein
          Length = 125

 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/83 (67%), Positives = 65/83 (78%)

Query: 88  NPGNNLYVTGLSTRVTEEDLEKFFSKEGKVQSCHVVLDPRTKESRGFAFVTMDSVDDARR 147
           NPGNNLYVTGLS RVT+ DLEK FS EG+V    +VLDP T+ESRGF FVTM +V +A  
Sbjct: 40  NPGNNLYVTGLSARVTDRDLEKHFSAEGEVIDASIVLDPWTRESRGFGFVTMATVKEADL 99

Query: 148 CIKYLHRTVLEGRLVTVEKAKRT 170
           CIKYL R+VLEGR++TVEK   T
Sbjct: 100 CIKYLDRSVLEGRVITVEKLLLT 122



>Os01g0367300 RNA-binding region RNP-1 (RNA recognition motif) domain containing
           protein
          Length = 698

 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 52/83 (62%)

Query: 86  LRNPGNNLYVTGLSTRVTEEDLEKFFSKEGKVQSCHVVLDPRTKESRGFAFVTMDSVDDA 145
           L  PG NL+V G S   TE DLEK FSK G+V S  VV D R+ +SRGF F++++  +DA
Sbjct: 612 LGKPGRNLFVAGFSYATTERDLEKKFSKYGRVTSARVVRDKRSGDSRGFGFLSLEKDEDA 671

Query: 146 RRCIKYLHRTVLEGRLVTVEKAK 168
              I+    T   GR++ VEK+K
Sbjct: 672 DAAIRACDETEWNGRIILVEKSK 694



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.131    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,744,626
Number of extensions: 127856
Number of successful extensions: 466
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 474
Number of HSP's successfully gapped: 4
Length of query: 279
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 179
Effective length of database: 11,814,401
Effective search space: 2114777779
Effective search space used: 2114777779
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 155 (64.3 bits)