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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0724600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Transformer-SR ribonucleoprotein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.14 (0.0227) R2 : 0.388
β1 : 0.856 (0.0831) R2dD : 0.148 R2D : 0.0255
β2 : 0.556 (0.0546) R2dC : 0.14 R2C : 0.0878
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.527 (0.0485) R2dN8 : 0.212 R2N8 : 0.104
σ : 0.427
deviance : 83.11
__
_____
C
peak time of C : 10.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
66.74 0.384 9.36 0.312 0.546 2.71 0.0722 -12.5 0.508 10.3 0.998 3119 -- --
81.17 0.423 9.14 0.866 0.556 -1.38 0.103 -- 0.524 10.3 0.998 3119 -- --
66.76 0.381 9.36 0.317 0.545 2.71 -- -12.5 0.508 10.2 0.9929 3122 -- --
72.15 0.396 9.15 1.07 0.546 -0.811 -- -- 0.485 10.3 0.7834 2712 -- --
84.65 0.429 9.37 0.294 -- 2.71 -- -12.7 0.502 -- 0.8091 2532 -- --
83.06 0.427 9.14 0.852 0.557 -- 0.115 -- 0.526 10.4 -- -- -- --
83.11 0.427 9.14 0.856 0.556 -- -- -- 0.527 10.4 -- -- -- --
89.27 0.44 9.17 1.07 -- -0.913 -- -- 0.483 -- 0.7544 2310 -- --
99.14 0.464 9.17 -- 0.542 -0.432 -- -- 0.398 10.2 0.7581 2389 -- --
102.03 0.472 9.16 0.847 -- -- -- -- 0.525 -- -- -- -- --
102.44 0.473 9.16 -- 0.551 -- -- -- 0.431 10.3 -- -- -- --
116.7 0.503 9.19 -- -- -0.502 -- -- 0.394 -- 0.7603 2310 -- --
120.96 0.513 9.18 -- -- -- -- -- 0.431 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 66.47 precipitation 0.1 4320 > th dose dependent rect. 18 2
2 67.27 precipitation 0.1 4320 > th dose dependent rect. 4 10
4 67.45 precipitation 0.1 4320 > th dose dependent rect. 3 14
10 67.85 precipitation 0.1 4320 < th dose independent rect. 18 2
11 67.85 precipitation 0.1 4320 < th dose dependent rect. 18 2
12 67.87 precipitation 0.1 4320 > th dose independent rect. 18 2
16 67.96 precipitation 0.1 4320 > th dose dependent rect. 4 2
17 68.10 wind 1.0 4320 > th dose independent rect. 18 1
18 68.15 precipitation 0.1 4320 > th dose independent rect. 4 2
25 68.33 precipitation 0.1 4320 > th dose dependent rect. 13 1
29 68.52 precipitation 0.1 4320 > th dose dependent rect. 11 6
32 68.59 precipitation 0.1 4320 < th dose independent rect. 4 2
33 68.59 precipitation 0.1 4320 < th dose dependent rect. 4 2
34 68.59 precipitation 0.1 4320 > th dose dependent rect. 18 23
35 68.61 precipitation 0.1 4320 > th dose independent rect. 4 10
36 68.61 precipitation 0.1 4320 > th dose dependent rect. 4 4
39 68.64 precipitation 0.1 4320 < th dose independent rect. 4 10
40 68.64 precipitation 0.1 4320 > th dose independent rect. 3 14
41 68.64 precipitation 0.1 4320 > th dose dependent rect. 7 10
42 68.64 precipitation 0.1 4320 < th dose dependent rect. 4 10
43 68.66 precipitation 0.1 4320 < th dose independent rect. 3 14
44 68.66 precipitation 0.1 1440 < th dose independent rect. 23 15
46 68.66 precipitation 0.1 4320 < th dose dependent rect. 3 14
47 68.66 precipitation 0.1 1440 < th dose dependent rect. 23 15
51 68.69 precipitation 0.1 4320 > th dose dependent rect. 7 7
54 68.77 precipitation 0.1 1440 > th dose independent rect. 23 15
62 68.85 precipitation 0.1 4320 > th dose independent rect. 4 4
78 68.97 wind 1.0 4320 < th dose independent rect. 18 1
81 69.03 precipitation 0.1 4320 > th dose dependent rect. 18 20
97 69.21 precipitation 0.1 4320 < th dose independent rect. 4 4
99 69.21 precipitation 0.1 4320 < th dose dependent rect. 4 4
104 69.26 precipitation 0.1 1440 > th dose dependent rect. 23 15
105 69.27 precipitation 0.1 4320 > th dose dependent rect. 11 3
115 69.33 wind 1.0 14400 < th dose independent rect. 20 9
145 69.55 precipitation 0.1 4320 > th dose dependent rect. 18 15
153 69.59 precipitation 0.1 4320 > th dose dependent rect. 18 18
169 69.70 wind 1.0 43200 < th dose independent rect. 16 13
187 69.82 precipitation 0.1 1440 < th dose independent rect. 23 7
188 69.82 precipitation 0.1 1440 < th dose dependent rect. 23 7
189 69.83 precipitation 0.1 1440 > th dose independent rect. 23 7
195 69.86 precipitation 0.1 4320 < th dose independent rect. 7 1
196 69.86 precipitation 0.1 4320 < th dose dependent rect. 7 1
197 69.88 wind 1.0 14400 > th dose independent rect. 20 9
206 69.92 precipitation 0.1 4320 < th dose independent rect. 13 1
209 69.92 precipitation 0.1 4320 < th dose dependent rect. 13 1
234 70.01 precipitation 0.1 4320 > th dose independent rect. 13 1
242 70.03 precipitation 0.1 4320 > th dose independent rect. 7 1
245 70.03 precipitation 0.1 4320 > th dose dependent rect. 7 1
259 70.10 humidity 80.0 1440 < th dose independent rect. 11 1
277 70.20 precipitation 0.1 4320 < th dose independent rect. 11 6
279 70.20 wind 1.0 14400 > th dose independent rect. 19 11
282 70.20 precipitation 0.1 4320 < th dose dependent rect. 11 6
288 70.23 precipitation 0.1 1440 > th dose independent sin 5 NA
295 70.26 precipitation 0.1 1440 < th dose independent sin 5 NA
298 70.26 precipitation 0.1 1440 < th dose dependent sin 5 NA
314 70.32 precipitation 0.1 4320 > th dose independent rect. 11 6
326 70.35 precipitation 0.1 4320 > th dose independent rect. 13 4
328 70.36 precipitation 0.1 4320 < th dose independent rect. 7 7
335 70.36 precipitation 0.1 4320 < th dose dependent rect. 7 7
374 70.46 wind 1.0 43200 > th dose independent rect. 16 13
379 70.49 precipitation 0.1 4320 < th dose independent rect. 7 10
381 70.49 precipitation 0.1 4320 < th dose dependent rect. 7 10
417 70.58 precipitation 0.1 4320 > th dose independent rect. 7 7
422 70.60 precipitation 0.1 1440 > th dose dependent sin 6 NA
425 70.61 precipitation 0.1 4320 > th dose independent rect. 7 10
438 70.66 humidity 80.0 1440 > th dose independent rect. 11 1
446 70.68 precipitation 0.1 4320 > th dose independent rect. 3 17
454 70.71 precipitation 0.1 4320 < th dose independent rect. 3 17
455 70.71 precipitation 0.1 4320 < th dose dependent rect. 3 17
462 70.73 precipitation 0.1 4320 > th dose dependent sin 4 NA
472 70.80 precipitation 0.1 1440 > th dose dependent rect. 23 7
476 70.84 precipitation 0.1 4320 > th dose dependent rect. 18 8
479 70.86 precipitation 0.1 4320 < th dose independent rect. 11 3
480 70.86 precipitation 0.1 4320 < th dose dependent rect. 11 3
500 70.92 precipitation 0.1 4320 > th dose independent rect. 11 3
557 71.09 precipitation 0.1 4320 > th dose independent rect. 24 20
570 71.12 precipitation 0.1 4320 < th dose independent rect. 24 20
574 71.12 precipitation 0.1 4320 < th dose dependent rect. 24 20
587 71.15 humidity 90.0 4320 > th dose dependent rect. 7 2
610 71.25 precipitation 0.1 4320 < th dose independent rect. 18 23
612 71.25 precipitation 0.1 4320 < th dose dependent rect. 18 23
615 71.26 precipitation 0.1 4320 > th dose independent rect. 18 23
629 71.29 humidity 90.0 4320 > th dose dependent rect. 6 4
776 71.72 wind 1.0 14400 < th dose independent sin 12 NA
841 71.86 wind 3.0 14400 < th dose independent rect. 22 4
858 71.91 wind 1.0 14400 > th dose independent sin 11 NA
864 71.92 precipitation 0.1 1440 < th dose independent rect. 19 9
867 71.92 precipitation 0.1 1440 < th dose dependent rect. 19 9
869 71.93 atmosphere 1005.0 4320 > th dose independent rect. 15 1
895 72.01 wind 1.0 14400 > th dose dependent rect. 22 6
900 72.04 precipitation 0.1 4320 < th dose independent rect. 16 4
902 72.04 precipitation 0.1 4320 < th dose dependent rect. 16 4
907 72.05 wind 5.0 14400 < th dose dependent rect. 22 6
911 72.06 wind 1.0 1440 < th dose independent rect. 9 10
926 72.09 wind 3.0 14400 < th dose dependent rect. 1 2
931 72.10 precipitation 0.1 4320 > th dose independent rect. 16 4
944 72.12 precipitation 0.1 4320 > th dose dependent rect. 3 17
972 72.20 wind 3.0 14400 < th dose independent rect. 24 2
994 72.28 humidity 90.0 4320 > th dose independent rect. 13 1
996 72.29 precipitation 0.1 4320 < th dose independent rect. 13 7
998 72.29 precipitation 0.1 4320 < th dose dependent rect. 13 7