BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0127900 Os10g0127900|AK121817
(292 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0127900 Conserved hypothetical protein 491 e-139
Os10g0128200 Cyclin-like F-box domain containing protein 285 3e-77
Os10g0126700 Cyclin-like F-box domain containing protein 248 4e-66
Os10g0126000 Cyclin-like F-box domain containing protein 246 1e-65
Os10g0126500 Cyclin-like F-box domain containing protein 241 7e-64
Os10g0127000 Conserved hypothetical protein 233 1e-61
Os02g0188900 Cyclin-like F-box domain containing protein 231 4e-61
Os10g0126800 Cyclin-like F-box domain containing protein 223 1e-58
Os10g0126600 Cyclin-like F-box domain containing protein 218 5e-57
Os10g0128600 Cyclin-like F-box domain containing protein 211 4e-55
Os10g0124700 Cyclin-like F-box domain containing protein 182 3e-46
Os11g0201332 Cyclin-like F-box domain containing protein 100 1e-21
Os11g0200600 Cyclin-like F-box domain containing protein 95 5e-20
Os11g0208300 88 8e-18
Os10g0128800 Cyclin-like F-box domain containing protein 82 3e-16
Os08g0197500 Cyclin-like F-box domain containing protein 79 4e-15
Os08g0197300 Leucine-rich repeat 2 containing protein 75 8e-14
Os08g0199000 Conserved hypothetical protein 74 9e-14
Os11g0201600 Cyclin-like F-box domain containing protein 73 3e-13
Os11g0202200 Cyclin-like F-box domain containing protein 72 4e-13
Os10g0125300 Conserved hypothetical protein 70 2e-12
Os11g0231600 Cyclin-like F-box domain containing protein 67 1e-11
Os11g0201299 Conserved hypothetical protein 66 2e-11
Os11g0209200 Similar to Ribosomal RNA apurinic site specifi... 65 7e-11
>Os10g0127900 Conserved hypothetical protein
Length = 292
Score = 491 bits (1264), Expect = e-139, Method: Compositional matrix adjust.
Identities = 246/292 (84%), Positives = 246/292 (84%)
Query: 1 PLDIQKRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFFAQLEAGCPALEDLFLHQCGV 60
PLDIQKRR GFFAQLEAGCPALEDLFLHQCGV
Sbjct: 1 PLDIQKRRRAPYVAAVCPCPAPRRAPLRRVSPSRRLAGFFAQLEAGCPALEDLFLHQCGV 60
Query: 61 HDDEISSHTLKVLTFDSVFFYMPMDTVEFTLLNKTSISLPSVTSLTISTPEGFTPILKDX 120
HDDEISSHTLKVLTFDSVFFYMPMDTVEFTLLNKTSISLPSVTSLTISTPEGFTPILKD
Sbjct: 61 HDDEISSHTLKVLTFDSVFFYMPMDTVEFTLLNKTSISLPSVTSLTISTPEGFTPILKDT 120
Query: 121 XXXXXXXXXXXXXXXXFRFRFDANDLGQYLQSLSGITNLEFNYQGSKLTIENHLQWCPEF 180
FRFRFDANDLGQYLQSLSGITNLEFNYQGSKLTIENHLQWCPEF
Sbjct: 121 ASVVTASVSVSVTMSSFRFRFDANDLGQYLQSLSGITNLEFNYQGSKLTIENHLQWCPEF 180
Query: 181 LNVVNLTLGQWCLDSNFYALIVFLQNSPRLQKLTLKLEKSNMRISRRIIGELTEISFTCE 240
LNVVNLTLGQWCLDSNFYALIVFLQNSPRLQKLTLKLEKSNMRISRRIIGELTEISFTCE
Sbjct: 181 LNVVNLTLGQWCLDSNFYALIVFLQNSPRLQKLTLKLEKSNMRISRRIIGELTEISFTCE 240
Query: 241 HLNTVEVICSENDPQVITVQDFFVSSGMTSVQFHIKHWSPYANDLPAFIRSI 292
HLNTVEVICSENDPQVITVQDFFVSSGMTSVQFHIKHWSPYANDLPAFIRSI
Sbjct: 241 HLNTVEVICSENDPQVITVQDFFVSSGMTSVQFHIKHWSPYANDLPAFIRSI 292
>Os10g0128200 Cyclin-like F-box domain containing protein
Length = 421
Score = 285 bits (729), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 149/254 (58%), Positives = 173/254 (68%), Gaps = 10/254 (3%)
Query: 38 GFFAQLEAGCPALEDLFLHQCGVHDDEISSHTLKVLTFDSVFFYMPMDTVEFTLLNKTSI 97
GFF Q+E GCP LEDL LHQC + D EISS TLKVLT +D E + + SI
Sbjct: 176 GFFEQIETGCPLLEDLLLHQCFIWDGEISSQTLKVLT---------VDATELYTVKEMSI 226
Query: 98 SLPSVTSLTISTPEGFTPILKDXXXXXXXXXXXXXXXXXFRFRFDANDLGQYLQSLSGIT 157
S P++TSLT+S E +LKD F +DANDL QYL LS +
Sbjct: 227 STPNLTSLTLSGLEYPKAVLKDMPLLVTASVSVTFDALNFDGYYDANDLRQYLWGLSAVR 286
Query: 158 NLEFNYQGSKLTIENHLQWCPEFLNVVNLTLGQWCLDSNFYALIVFLQNSPRLQKLTLKL 217
NLEF+Y+G++L I N+ QWCPEF++VVNLTLG+WCLD+NF+ALIVFLQNSPRL KLTLKL
Sbjct: 287 NLEFHYEGAELMIANNSQWCPEFVDVVNLTLGEWCLDANFHALIVFLQNSPRLVKLTLKL 346
Query: 218 EKSNMRISRRIIGELTEISFTCEHLNTVEVICSENDPQVITVQDFFVSSGMTSVQFHIKH 277
K +RIIGEL E SFTCEHL VEVIC ENDPQVI V+DFFV SGMTSVQFHIKH
Sbjct: 347 AKDRWTTPQRIIGELEERSFTCEHLKIVEVICLENDPQVIGVEDFFVRSGMTSVQFHIKH 406
Query: 278 WSPYAN-DLPAFIR 290
W LPAFI+
Sbjct: 407 WRKDEEYKLPAFIQ 420
>Os10g0126700 Cyclin-like F-box domain containing protein
Length = 502
Score = 248 bits (633), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 132/240 (55%), Positives = 160/240 (66%), Gaps = 12/240 (5%)
Query: 38 GFFAQLEAGCPALEDLFLHQCGVHDDEISSHTLKVLTFDSVFFYMPMDTVEFTLLNKTSI 97
GFF QL+ GCPALE L+L C V DDEISS+TLKVLTFD T EF ++ SI
Sbjct: 240 GFFKQLQIGCPALERLYLDDCIVADDEISSNTLKVLTFD---------TTEFCYEHRISI 290
Query: 98 SLPSVTSLTISTPEGFTPILKDXXXXXXXXXXXXXXXXXFRFRFDANDLGQYLQSLSGIT 157
S+P+VT+L + P+LKD FDA DL YL S S +
Sbjct: 291 SIPTVTTLALRNTICGKPVLKDVASLVSASVVLYCVESG---NFDAYDLRHYLWSFSHVK 347
Query: 158 NLEFNYQGSKLTIENHLQWCPEFLNVVNLTLGQWCLDSNFYALIVFLQNSPRLQKLTLKL 217
+L F+YQG KLTIEN+LQWCP+F N+V LTLG+WCL++NFYALIVFLQNSPRL+KLTL L
Sbjct: 348 DLIFSYQGRKLTIENNLQWCPKFFNLVGLTLGKWCLNANFYALIVFLQNSPRLEKLTLIL 407
Query: 218 EKSNMRISRRIIGELTEISFTCEHLNTVEVICSENDPQVITVQDFFVSSGMTSVQFHIKH 277
+ N + S IGEL E SFTCEHL +VE+ C E+DP VI V DFFV SGM+S Q HI++
Sbjct: 408 AEDNCKTSEVFIGELEEKSFTCEHLTSVEMKCWEDDPLVINVVDFFVGSGMSSSQIHIEY 467
>Os10g0126000 Cyclin-like F-box domain containing protein
Length = 410
Score = 246 bits (628), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 136/240 (56%), Positives = 163/240 (67%), Gaps = 15/240 (6%)
Query: 38 GFFAQLEAGCPALEDLFLHQCGVHDDEISSHTLKVLTFDSVFFYMPMDTVEFTLLNKTSI 97
GFF QLE+GCPALEDL L C + DEISS TLKVLT + +F++ +KTSI
Sbjct: 186 GFFKQLESGCPALEDLSLDDCVISGDEISSQTLKVLT---------IKDTKFSMEHKTSI 236
Query: 98 SLPSVTSLTISTPEGFTPILKDXXXXXXXXXXXXXXXXXFRFRFDANDLGQYLQSLSGIT 157
+ PSVTSLT+ P +LKD F FDA L QYL +LSG+
Sbjct: 237 NTPSVTSLTLWRPAHGIVVLKDMASVVTASVKPSE----FIDEFDARGLRQYLWALSGVK 292
Query: 158 NLEFNYQGSKLTIENHLQWCPEFLNVVNLTLGQWCLDSNFYALIVFLQNSPRLQKLTLKL 217
NLEF Y G +LTIE +LQ CP+F N+VNLTLG+WCLD+NFYALI+F+QN+PRL+KLTLKL
Sbjct: 293 NLEFYYLG-ELTIEGNLQLCPKFNNLVNLTLGRWCLDANFYALILFMQNTPRLEKLTLKL 351
Query: 218 EKSNMRISRRIIGELTEISFTCEHLNTVEVICSENDPQVITVQDFFVSSGMTSVQFHIKH 277
+ +RIIGELTE SFTC HL VEVICSENDP + + DFFVSSGMT+ Q HIKH
Sbjct: 352 HPFRYQ-QQRIIGELTERSFTCGHLKIVEVICSENDPLINHLVDFFVSSGMTTAQIHIKH 410
>Os10g0126500 Cyclin-like F-box domain containing protein
Length = 458
Score = 241 bits (614), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 129/240 (53%), Positives = 158/240 (65%), Gaps = 13/240 (5%)
Query: 38 GFFAQLEAGCPALEDLFLHQCGVHDDEISSHTLKVLTFDSVFFYMPMDTVEFTLLNKTSI 97
GFF QL+ GCPALE L C V DDEISS+TLKVLTFD T +F + SI
Sbjct: 174 GFFKQLQMGCPALERFDLDGCIVADDEISSNTLKVLTFD---------TTKFCYEYRISI 224
Query: 98 SLPSVTSLTISTPEGFTPILKDXXXXXXXXXXXXXXXXXFRFRFDANDLGQYLQSLSGIT 157
S P+VT+L + G P+LKD FDANDL YL S S +
Sbjct: 225 STPTVTTLGLRNTIGGKPVLKDVASLVSASVVLYCVETS---DFDANDLRHYLWSFSHVK 281
Query: 158 NLEFNYQGSKLTIENHLQWCPEFLNVVNLTLGQWCLDSNFYALIVFLQNSPRLQKLTLKL 217
+L F+YQG KLTIEN+LQWCP+F N+V LTLG+WCL++NFYALIVFLQNSPRL+KLTL L
Sbjct: 282 DLIFSYQGKKLTIENNLQWCPKFFNLVGLTLGKWCLNANFYALIVFLQNSPRLEKLTLIL 341
Query: 218 EKSNMRISRRIIGELTEISFTCEHLNTVEVICSENDPQVITVQDFFVSSGMTSVQFHIKH 277
+ N + + IG+L E SFTCEHL +VEV C E+DP ++ V DFFV SGM+S Q HI++
Sbjct: 342 AEDNWKTTEVFIGDLEERSFTCEHLTSVEVKCWEDDP-LVNVVDFFVGSGMSSAQIHIEY 400
>Os10g0127000 Conserved hypothetical protein
Length = 157
Score = 233 bits (593), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 110/152 (72%), Positives = 127/152 (83%)
Query: 139 FRFDANDLGQYLQSLSGITNLEFNYQGSKLTIENHLQWCPEFLNVVNLTLGQWCLDSNFY 198
+ FDANDL Q L SLSG+TNLEFNY+G++LT EN+LQWCPEF++VVNLTLGQWCLD+NFY
Sbjct: 2 YGFDANDLRQCLWSLSGVTNLEFNYEGTELTFENNLQWCPEFIDVVNLTLGQWCLDANFY 61
Query: 199 ALIVFLQNSPRLQKLTLKLEKSNMRISRRIIGELTEISFTCEHLNTVEVICSENDPQVIT 258
ALIVFLQNSPRL+KLTL L K S RI+GEL E SFTCEHL VEV C E+DPQVI+
Sbjct: 62 ALIVFLQNSPRLEKLTLNLAKCIADKSPRIVGELMERSFTCEHLKIVEVKCLEDDPQVIS 121
Query: 259 VQDFFVSSGMTSVQFHIKHWSPYANDLPAFIR 290
V+DFF S+GM SVQF IKHW Y ++LPAFIR
Sbjct: 122 VEDFFASNGMASVQFDIKHWGQYKDELPAFIR 153
>Os02g0188900 Cyclin-like F-box domain containing protein
Length = 432
Score = 231 bits (590), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 128/257 (49%), Positives = 161/257 (62%), Gaps = 16/257 (6%)
Query: 38 GFFAQLEAGCPALEDLFLHQCGVHDDEISSHTLKVLTFDSVFFYMPMDTVEFTLLNKTSI 97
GFF QLE GCP L+DL L+ C + DDEISS TL VLT M +F L ++ I
Sbjct: 174 GFFEQLEIGCPLLQDLLLYDCIIGDDEISSETLNVLT---------MYGCQFPTLQESCI 224
Query: 98 SLPSVTSLTISTPEGFTPILKDXXXXXXXXXXXXXXXXXFRFRFDANDLGQYLQSLSGIT 157
S P++TSL + PE F P+L D F A D+ Q L SLSG+
Sbjct: 225 SAPNLTSLIMHQPENFVPVLDDVASLVTATVDLFPL-----IEFCAYDMRQLLWSLSGVR 279
Query: 158 NLEFNYQGSKLTIENHLQWCPEFLNVVNLTLGQWCLDSNFYALIVFLQNSPRLQKLTLKL 217
NL+ +Y K+TI+N+ Q CP+F+N+V+LTLGQWCLDS+FY LI+FLQ+SP+L+KLTLKL
Sbjct: 280 NLDLDYYACKMTIKNNPQLCPKFINLVDLTLGQWCLDSDFYVLIIFLQSSPKLEKLTLKL 339
Query: 218 EKSNMRISRRIIG-ELTEISFTCEHLNTVEVICSEND-PQVITVQDFFVSSGMTSVQFHI 275
EK IIG ELTE SFTCEHL VE+IC E+D P V+ FV +GM SV+F I
Sbjct: 340 EKYYPHPYEHIIGDELTERSFTCEHLKIVEIICMEDDEPLAKIVEGLFVDNGMNSVRFDI 399
Query: 276 KHWSPYANDLPAFIRSI 292
K+WS LPAF R +
Sbjct: 400 KYWSQIPFQLPAFYREL 416
>Os10g0126800 Cyclin-like F-box domain containing protein
Length = 454
Score = 223 bits (569), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/242 (53%), Positives = 157/242 (64%), Gaps = 12/242 (4%)
Query: 38 GFFAQLEAGCPALEDLFLHQCGVHDDEISSHTLKVLTFDSVFFYMPMDTVEFTLLNKTSI 97
GFF QLE GCP LE+LFL +C + DDEISS TLKVLT D+ F KTSI
Sbjct: 220 GFFKQLEMGCPELEELFLDECFIVDDEISSQTLKVLTLDATHFCCGF---------KTSI 270
Query: 98 SLPSVTSLTISTPEGFTPILKDXXXXXXXXXXXXXXXXXFRFRFDANDLGQYLQSLSGIT 157
S PS+TSL + P P+L D F ANDL YL SL +
Sbjct: 271 SSPSITSLALHYPMSGKPVLNDMEALVSTSMLLCHVKDD---DFAANDLRDYLWSLYNVE 327
Query: 158 NLEFNYQGSKLTIENHLQWCPEFLNVVNLTLGQWCLDSNFYALIVFLQNSPRLQKLTLKL 217
L+F+Y G KLT+EN+LQ CP+F+N+V+LTLG WCLD+NFY LIVFLQNSP L+KLTL+L
Sbjct: 328 ILDFSYHGKKLTMENNLQLCPKFINLVSLTLGPWCLDANFYGLIVFLQNSPILEKLTLEL 387
Query: 218 EKSNMRISRRIIGELTEISFTCEHLNTVEVICSENDPQVITVQDFFVSSGMTSVQFHIKH 277
+RIIG++ E SFTCEHL +VEVIC E+DP V V +FFV+SGM+SVQ HIK
Sbjct: 388 AMYRTGKLQRIIGQIEERSFTCEHLTSVEVICLEDDPLVNDVVNFFVNSGMSSVQIHIKQ 447
Query: 278 WS 279
WS
Sbjct: 448 WS 449
>Os10g0126600 Cyclin-like F-box domain containing protein
Length = 351
Score = 218 bits (554), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 111/182 (60%), Positives = 131/182 (71%), Gaps = 11/182 (6%)
Query: 38 GFFAQLEAGCPALEDLFLHQCGVHDDEISSHTLKVLTFDSVFFYMPMDTVEFTLLNKTSI 97
GFF QL+AGCP LE+LFLH C + D+EI S +LKVLT +D EF+ NK I
Sbjct: 179 GFFKQLDAGCPELEELFLHDCTIADEEIFSQSLKVLT---------IDDTEFSKANKAYI 229
Query: 98 SLPSVTSLTISTPEGFTPILKDXXXXXXXXXXXXXXXXXFRFRFDANDLGQYLQSLSGIT 157
S+PSVTSLT+S+PE TP+LKD F + FDANDL Q L SLSG+T
Sbjct: 230 SIPSVTSLTLSSPENSTPMLKDMALLTTTSVSVKFYT--FSYGFDANDLRQCLWSLSGVT 287
Query: 158 NLEFNYQGSKLTIENHLQWCPEFLNVVNLTLGQWCLDSNFYALIVFLQNSPRLQKLTLKL 217
NLE NY+G++LT EN+LQWCPEF+NVVNLTLGQWCLD+NFYALIVFLQNS RL+KLTL L
Sbjct: 288 NLELNYEGTELTFENNLQWCPEFINVVNLTLGQWCLDANFYALIVFLQNSARLEKLTLNL 347
Query: 218 EK 219
K
Sbjct: 348 AK 349
>Os10g0128600 Cyclin-like F-box domain containing protein
Length = 453
Score = 211 bits (538), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 120/241 (49%), Positives = 150/241 (62%), Gaps = 19/241 (7%)
Query: 38 GFFAQLEAGCPALEDLFLHQCGVHDDEISSHTLKVLTFDSVFFYMPMDTVEFTLLNKTSI 97
GFF QLE GCP LE+LFL + V D EISS TLKVLT S +F+ +T+I
Sbjct: 231 GFFQQLEMGCPVLENLFLDESIVADVEISSRTLKVLTIKST---------QFSYKFRTTI 281
Query: 98 SLPSVTSLTISTPEGFTPILKDXXXXXXXXXXXXXXXXXFRFRFDANDLGQYLQSLSGIT 157
S PSVT L + P + D D++D Q L+SLS
Sbjct: 282 STPSVTYLKLWRPVNGIYVFNDMPLLVTSILVLYDVQ-------DSSDFCQNLRSLSAAK 334
Query: 158 NLEFNYQGSKLTIENHLQWCPEFLNVVNLTLGQWCLDSNFYALIVFLQNSPRLQKLTLKL 217
LEF+Y G KLT+EN+LQ P+F N+V+LTLGQWCLD+NFY L+VFLQN+P+L+KLTL+L
Sbjct: 335 RLEFDYFGRKLTMENNLQLYPKFNNLVSLTLGQWCLDANFYGLVVFLQNAPKLEKLTLEL 394
Query: 218 EKSNMRISRRIIGELTEISFTCEHLNTVEVICSENDPQVITVQDFFVSSGMTSVQFHIKH 277
EK+ RIIG+L + SFTCEHL VEV+CSE DP V V +FFV+SG+TS Q I
Sbjct: 395 EKNT---PERIIGKLEDRSFTCEHLTRVEVVCSEGDPLVKDVVNFFVNSGLTSAQVQIIR 451
Query: 278 W 278
W
Sbjct: 452 W 452
>Os10g0124700 Cyclin-like F-box domain containing protein
Length = 392
Score = 182 bits (461), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 109/249 (43%), Positives = 142/249 (57%), Gaps = 28/249 (11%)
Query: 38 GFFAQLEAGCPALEDLFLHQCGVHDDEISSHTLKVLTFDSVFFYMPMDTVEFTLLNKTSI 97
GFF QL GCP LED+FL+ C + DDEISS TLK L + F+ + SI
Sbjct: 165 GFFEQLSRGCPQLEDVFLNDCIILDDEISSTTLKTLN---------IYASRFSEDYRASI 215
Query: 98 SLPSVTSLTISTPEGFTPILKDXXXXXXXXXXXXXXXXXFRFRFDANDLGQYLQSLSGIT 157
S PS+TSLT+ P+ P LKD D D+ + L SLSG+
Sbjct: 216 STPSLTSLTLYKPDASVPSLKDMKSLVSASIILD----------DNTDIHELLMSLSGVR 265
Query: 158 NLEFNYQGSKLTIENHLQWCPEFLNVVNLTLGQWCLDSNFYALIVFLQNSPRLQKLTLKL 217
NL+ +TI + QWCPEF ++VNL+LGQ+CL S YAL VFL+NSP+L+KLTL
Sbjct: 266 NLDLECPQKMVTIAKNTQWCPEFKDLVNLSLGQFCLGSKLYALTVFLKNSPKLEKLTLDP 325
Query: 218 EKSNMRISRRIIGELTEISFTCEHLNTVEVICSENDPQVIT-VQDFFVSSGMTSVQFHIK 276
+ II +L E SF CEHL VEVICSE+D ++ V+D FV+SGM S+Q + K
Sbjct: 326 PEV-------IIDKLEERSFECEHLKIVEVICSEDDSTLLKLVEDIFVTSGMNSLQINRK 378
Query: 277 -HWSPYAND 284
+ Y +D
Sbjct: 379 SSYKQYYSD 387
>Os11g0201332 Cyclin-like F-box domain containing protein
Length = 425
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 111/244 (45%), Gaps = 31/244 (12%)
Query: 45 AGCPALEDLFLHQCGVHDDEISSHTLKVLTFDSVFFYMPMDTVEFTLLNKTSISLPSVTS 104
+ CPAL++L + C + D+ISS +LK L F M +T IS+PS+
Sbjct: 155 SSCPALKELKMTNCEISADKISSKSLKRLRICECKFKSKM---------RTRISVPSLLF 205
Query: 105 LTISTPEGFTPILKDXXXXXXXXXXXXXXXXXFRFRFDANDLGQ---------------- 148
L + +G TP L+D + D ND G
Sbjct: 206 LKLIAVKGRTPFLEDMPVLVAAKVLLLDFYC--KDCCDGNDPGYCPAGCTHCYGIDDGSA 263
Query: 149 ---YLQSLSGITNLEFNYQGSKLTIENHLQWCPEFLNVVNLTLGQWCLDSNFYALIVFLQ 205
L+ L+ TNLE ++ L+WCP F N+ L L QW S+ ALI LQ
Sbjct: 264 GCVLLKGLADATNLELIADPEVFILKRDLRWCPTFTNLKTLLLSQWFESSDHCALICILQ 323
Query: 206 NSPRLQKLTLKL-EKSNMRISRRIIGELTEISFTCEHLNTVEVICSENDPQVITVQDFFV 264
+SP L+KLTL+L +KS + + R I E SFT E+L TVEV C + D +V +
Sbjct: 324 HSPVLEKLTLQLSKKSVINVRSRAIYNSMEKSFTSENLKTVEVKCQDIDQRVHKLMKSLN 383
Query: 265 SSGM 268
S G+
Sbjct: 384 SYGI 387
>Os11g0200600 Cyclin-like F-box domain containing protein
Length = 460
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/258 (28%), Positives = 112/258 (43%), Gaps = 34/258 (13%)
Query: 38 GFFAQLEAGCPALEDLFLHQCGVHDDEISSHTLKVLTFDSVFFYMPMDTVEFTLLNKTSI 97
G F + PAL+DL + CG+ +++ +LK L F F P T I
Sbjct: 213 GRFTDDLSSLPALQDLEMESCGICTEKLVCQSLKHLCFTRCHFEEP-----------THI 261
Query: 98 SLPSVTSLTISTPEGFTPIL--------------KDXXXXXXXXXXXXXXXXXFRFRFDA 143
S P + SL ++ G+TP L K+ D+
Sbjct: 262 SAPGLISLQLNDIWGWTPSLETLPLLVTASVKLGKESMGCCSECTFHPGTCADCDGDPDS 321
Query: 144 NDLGQYLQSLSGITNLEFNYQGSKLTIENHLQWCPEFLNVVNLTLGQWCLDSNFYALIVF 203
+ ++L+ LS NLE + + L WCP F V L L W + +FYA++ F
Sbjct: 322 SFKCEFLRDLSNAVNLELAAEDGMCMFKQDLTWCPRFSKVKTLLLDGWVVGHDFYAVVCF 381
Query: 204 LQNSPRLQKLTLKLEKSNMRI-----SRRIIGELTEISFTCEHLNTVEVICSENDPQVIT 258
LQ++P L+KLTL+L + + R+ S R +G + + EHL TVEV C ND V
Sbjct: 382 LQHTPILEKLTLQLCEGHERMVEIEESSRSVGRMVQF----EHLQTVEVRCLRNDEWVHK 437
Query: 259 VQDFFVSSGMTSVQFHIK 276
+ + G+T + I+
Sbjct: 438 ILKILNTYGITPDKITIQ 455
>Os11g0208300
Length = 439
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 109/256 (42%), Gaps = 32/256 (12%)
Query: 45 AGCPALEDLFLHQCGVHDDEISSHTLKVLTFDSVFFYMPMDTVEFTLLNKTSISLPSVTS 104
+GCP+L +L + C ++ D++SS +LK L F ++E+ + + PS+ S
Sbjct: 173 SGCPSLVNLNMDTCCIYVDKLSSSSLKTLCLSQCQF-----SIEYHIW----LCFPSLVS 223
Query: 105 LTISTPEGFTPILKDXXX--------------XXXXXXXXXXXXXXFRFRFDANDL---- 146
L +S G P L+ + F D
Sbjct: 224 LELSYCPGRAPFLESMPSLLQAIVRFDEACEDKCQKSVSGGCDDDDDDYCFGCADEVVAG 283
Query: 147 ----GQYLQSLSGITNLEFNYQGSKLTIENHLQWCPEFLNVVNLTLGQWCLDSNFYALIV 202
G LQ LS T+LE + + L+WCP F + L L +WC+ + ALI
Sbjct: 284 YGTNGMCLQGLSEATHLELSADPAVYVFRRDLKWCPTFAKLKTLLLDEWCVVGDLSALIC 343
Query: 203 FLQNSPRLQKLTLKLEKS-NMRISRRIIGELTEISFTCEHLNTVEVICSENDPQVITVQD 261
FLQ+SP L+KLT++L+K+ + +E+ F HL VE+ C E + V +
Sbjct: 344 FLQHSPILEKLTIQLQKAPTCLMDSEGQYNTSELPFVSNHLKIVEIECKEVNTWVWKILK 403
Query: 262 FFVSSGMTSVQFHIKH 277
+ G+ Q +IK
Sbjct: 404 TLTTYGIPLKQINIKQ 419
>Os10g0128800 Cyclin-like F-box domain containing protein
Length = 295
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/185 (35%), Positives = 85/185 (45%), Gaps = 33/185 (17%)
Query: 38 GFFAQLEAGCPALEDLFLHQCGVHDDEISSHTLKVLTFDSVFFYMPMDTVEFTLLNKTSI 97
GFF QLE GCPA+ LFL +C V D EISS TLKVLT + + NKT+I
Sbjct: 135 GFFKQLEMGCPAMRGLFLDECSVEDVEISSQTLKVLT---------IKNTHVSYGNKTTI 185
Query: 98 SLPSVTSLTISTPEGFTPILKDXXXXXXXXXXXXXXXXXFRFRFDANDLGQYLQSLSGIT 157
S PSVT L + +P T +L D D+ D Q L+SLS
Sbjct: 186 STPSVTYLKLWSPLNGTYVLNDMPLLVTSLLVLYHVQ-------DSGDFFQNLRSLSAAK 238
Query: 158 NLEFNYQGSKLTIENHLQWCPEFLNVVNLTLGQWCLDSNFYALIVFLQNSPRLQKLTLKL 217
+LEF+Y G + P+ ++V+ W I L + KLTLKL
Sbjct: 239 SLEFDYVGRRKQ--------PDSRSMVSGCKLLW---------IDGLPSDLTKNKLTLKL 281
Query: 218 EKSNM 222
EK N+
Sbjct: 282 EKVNL 286
>Os08g0197500 Cyclin-like F-box domain containing protein
Length = 543
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 72/120 (60%), Gaps = 1/120 (0%)
Query: 150 LQSLSGITNLEFNYQGSKLTIENHLQWCPEFLNVVNLTLGQWCLDSNFYALIVFLQNSPR 209
+ SLS + +LE ++ + L+ CP F+N+ L+LG+WC+D+ F AL+ LQ SP
Sbjct: 366 IHSLSNVRSLELLAGAGEVVLSRELKSCPIFINLKTLSLGEWCMDAEFDALVFLLQRSPN 425
Query: 210 LQKLTLKLEKS-NMRISRRIIGELTEISFTCEHLNTVEVICSENDPQVITVQDFFVSSGM 268
L++L L+ + + N R + + T SFTC+ L V++ CS++D +V + F ++G+
Sbjct: 426 LERLFLEPQLNFNTRKALESGVKPTGRSFTCKDLQMVKIRCSKDDARVHMLAHLFRANGI 485
>Os08g0197300 Leucine-rich repeat 2 containing protein
Length = 369
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 74/128 (57%), Gaps = 13/128 (10%)
Query: 150 LQSLSGITNLEFNYQGSKLTIENHLQWCPEFLNVVNLTLGQWCLD--SNFYALIVFLQNS 207
L SLS +LE ++ + + CP F N+ L+LG+WC+ ++F LI+FLQNS
Sbjct: 217 LHSLSNARSLELLAHSGEVVLSRESRSCPTFSNLKTLSLGEWCISMVADFDILILFLQNS 276
Query: 208 PRLQKLTLKLEKSNMRISRRIIGELTE------ISFTCEHLNTVEVICSENDPQVITVQD 261
P L+KL L+LE +S I EL + SF C+ L+TV++ C+++D +V +
Sbjct: 277 PNLEKLFLQLE-----MSYNIQKELEKGIKPKGGSFACKRLSTVKIRCTKDDLRVHMLAQ 331
Query: 262 FFVSSGMT 269
F S+G++
Sbjct: 332 LFNSNGLS 339
>Os08g0199000 Conserved hypothetical protein
Length = 115
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 173 HLQWCPEFLNVVNLTLGQWCLDSNFYALIVFLQNSPRLQKLTLKLEKSNMRISRRIIG-E 231
L+ C F N+ L+LG+WC+ + F LI LQ SP L+ L LKLE S IG E
Sbjct: 4 ELRRCSTFGNLKTLSLGEWCMAAEFDGLIFLLQESPNLEMLFLKLELSYSNKEAINIGFE 63
Query: 232 LTEISFTCEHLNTVEVICSENDPQVITVQDFFVSSGMTSVQFHIKH 277
L E SF C++L V + CS++D +V + + FV++G+ + +++
Sbjct: 64 LKERSFACKNLEVVNIRCSKDDERVHMLAEIFVANGLPIEKIYVRR 109
>Os11g0201600 Cyclin-like F-box domain containing protein
Length = 386
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 68/134 (50%), Gaps = 15/134 (11%)
Query: 150 LQSLSGITNLEFNYQGSKLTIENHLQWCPEFLNVVNLTLGQWCLDSNFYALIVFLQNSPR 209
L+ LS T LE + LT E L+WCP F N+ L L + LD F+AL+ FLQ +P
Sbjct: 189 LRGLSRCTYLELSPSYQMLTFERDLRWCPTFSNLRTLVLSDYNLDGGFHALLCFLQQTPV 248
Query: 210 LQKLTLKLEKSNMRISRRIIGELTEIS------FTCEHLNTVEVICSEN-DPQVITVQDF 262
+QKLTLKL R+I G +IS HL VEV C + ++ +
Sbjct: 249 VQKLTLKL--------RKIHGPTVDISSYLKRPVVLRHLRIVEVKCPVSVQEEIFKLWKI 300
Query: 263 FVSSGMTSVQFHIK 276
++ G VQF+I+
Sbjct: 301 LITWGRYIVQFNIE 314
>Os11g0202200 Cyclin-like F-box domain containing protein
Length = 412
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 101/238 (42%), Gaps = 27/238 (11%)
Query: 45 AGCPALEDLFLHQCGVHDDEISSHTLKVLTFDSVFFYMPMDTVEFTLLNKTSISLPSVTS 104
+ CP+LE L C +ISS+++K L+ F P T ++ I +PS+ S
Sbjct: 167 SSCPSLEHLVFESCVFECAKISSNSVKHLSI--TFSNFPAGT------SRVRIDIPSLVS 218
Query: 105 LTISTPEGFTPILKDXXXXXXXXXXXXXXXXXFRFRFDANDLGQ-YLQSLSGITN----- 158
L + P+L+ F D+ D G+ +S G TN
Sbjct: 219 LRLDRIYDRKPVLERMPSLVDAFVSVPSSSEDFCGESDSGDCGRDGCESCYGFTNKNCVL 278
Query: 159 LEFNYQGSKLTIENH---------LQWCPEFLNVVNLTL-GQWCLDSNFYALIVFLQNSP 208
LE + L + N L+WCP F + L L G WC+ + + L L++SP
Sbjct: 279 LEGLSEAKMLVLINEDESFIFKRDLKWCPTFSKLKTLILNGYWCVPDDSHMLARILEHSP 338
Query: 209 RLQKLTLKLEKSNMRISRRIIGELTEISFTC---EHLNTVEVICSENDPQVITVQDFF 263
L+KL +L + + +I G L + + EHL VEV C+ D QV+ V +
Sbjct: 339 ALEKLVFQLGYQAYKRTNKIKGILNPMERSAGISEHLQIVEVQCNAIDGQVLKVLKYL 396
>Os10g0125300 Conserved hypothetical protein
Length = 78
Score = 70.1 bits (170), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 42/66 (63%)
Query: 225 SRRIIGELTEISFTCEHLNTVEVICSENDPQVITVQDFFVSSGMTSVQFHIKHWSPYAND 284
+RRI+G+L E SFTCE L VEVIC +DP V V++FF +SGMTS+Q I H Y
Sbjct: 3 TRRIVGKLKEKSFTCERLKVVEVICIGDDPLVNCVEEFFFNSGMTSLQIRINHLDGYELY 62
Query: 285 LPAFIR 290
P R
Sbjct: 63 EPRLYR 68
>Os11g0231600 Cyclin-like F-box domain containing protein
Length = 433
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 97/249 (38%), Gaps = 28/249 (11%)
Query: 45 AGCPALEDLFLHQCGVHDDEISSHTLKVLTFDSVFFYMPMDTVEFTLLNKTSISLPSVTS 104
+GCP+LE ++ ISS ++K L D F +T IS P + S
Sbjct: 172 SGCPSLEHPKFQGGFINARRISSPSVKHLIIDGSGFNRKF---------RTRISTPGLIS 222
Query: 105 LTISTPEGFTPILKDXXXXXXXXXXXXXXXXXFRFRFDANDLGQ---------------- 148
L + G TP+L+ + D G
Sbjct: 223 LELEF-WGSTPLLEGMPLLVTASVNLDHECRDRCANTEFGDCGDPECDDCDVMVSDGNGC 281
Query: 149 -YLQSLSGITNLEFNYQGSKLTIENHLQWCPEFLNVVNLTLGQWCLDSNFYALIVFLQNS 207
LQ LSG T LE + L WCP F + L + +W + SN L L++S
Sbjct: 282 VLLQGLSGATTLELTTESRVFMFRRDLMWCPIFSKLKTLLVNEWFMTSNMSGLACLLEHS 341
Query: 208 PRLQKLTLKLEKSNMR-ISRRIIGELTEISFTCEHLNTVEVICSENDPQVITVQDFFVSS 266
P ++KLTL+L K + + + +F ++LN VE+ C E D +V + +
Sbjct: 342 PIVEKLTLQLSKEPRNFVEIEDSDKPCKQAFLFKNLNIVEIKCQEGDERVKKILKILSQN 401
Query: 267 GMTSVQFHI 275
G+ + ++
Sbjct: 402 GIPLAKINV 410
>Os11g0201299 Conserved hypothetical protein
Length = 190
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 5/131 (3%)
Query: 150 LQSLSGITNLEFNYQGSKLTIENHLQWCPEFLNVVNLTLGQWCLDSNFYALIVFLQNSPR 209
L+ L+ +NLE + L+WCP F + L L QW + ALI LQ+SP
Sbjct: 29 LKGLADASNLELIADPKVFILRRDLRWCPTFTKLKTLLLIQWFESAENCALICILQHSPF 88
Query: 210 LQKLTLKLEKS---NMRISRRIIGELTEISFTCEHLNTVEVICSENDPQVITVQDFFVSS 266
L+KLTL+L K NMR SR I + + SF ++L TVEV C + D +V + S
Sbjct: 89 LEKLTLQLSKKPDINMR-SRAIYNSMGK-SFASDNLKTVEVKCQDIDKKVHKLIMSLNSY 146
Query: 267 GMTSVQFHIKH 277
G+ + +I+
Sbjct: 147 GIPPEKINIQQ 157
>Os11g0209200 Similar to Ribosomal RNA apurinic site specific lyase
Length = 474
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 174 LQWCPEFLNVVNLTLGQWCLDSNFYALIVFLQNSPRLQKLTLKL--EKSNMRISRRIIGE 231
L+WCP F + NL L +WCL SNF+AL L++SP L+KLTL++ E +M +
Sbjct: 359 LRWCPMFSKLKNLLLNEWCLLSNFWALACILEHSPVLRKLTLQISKEAKSMMQTEENDNP 418
Query: 232 LTEISFTCEHLNTVEVICSENDPQVITVQDFF 263
L + + EHL V+V C E D V + +
Sbjct: 419 LRKPAAISEHLKVVKVHCKEVDEVVYKIGKWL 450
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.138 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,285,347
Number of extensions: 243730
Number of successful extensions: 949
Number of sequences better than 1.0e-10: 26
Number of HSP's gapped: 918
Number of HSP's successfully gapped: 26
Length of query: 292
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 192
Effective length of database: 11,814,401
Effective search space: 2268364992
Effective search space used: 2268364992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 155 (64.3 bits)