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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0128600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.91 (0.0332) R2 : 0.812
β1 : 2.26 (0.122) R2dD : 0.148 R2D : 0.115
β2 : 3.41 (0.0849) R2dC : 0.669 R2C : 0.645
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.654 (0.0708) R2dN8 : 0.047 R2N8 : -0.000811
σ : 0.624
deviance : 177.59
__
_____
C
peak time of C : 19.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
168.41 0.61 5.93 2.03 3.19 0.825 0.116 -0.999 0.588 20 25.6 242 -- --
168.63 0.605 5.92 2.16 3.22 0.748 0.11 -- 0.619 20 25.7 212 -- --
168.38 0.604 5.93 2.04 3.2 0.831 -- -0.953 0.593 20 25.72 211 -- --
168.63 0.605 5.92 2.15 3.21 0.739 -- -- 0.618 20 25.67 210 -- --
530.59 1.07 5.94 1.23 -- 3.29 -- -2.68 0.249 -- 24.38 570 -- --
177.43 0.624 5.91 2.27 3.41 -- 0.237 -- 0.653 19.7 -- -- -- --
177.59 0.624 5.91 2.26 3.41 -- -- -- 0.654 19.7 -- -- -- --
540.3 1.08 5.89 1.65 -- 3.04 -- -- 0.322 -- 24.41 562 -- --
281.86 0.782 5.99 -- 3.02 1.27 -- -- 0.24 20.3 22.66 269 -- --
805.34 1.33 5.83 2.22 -- -- -- -- 0.605 -- -- -- -- --
312.32 0.827 5.97 -- 3.39 -- -- -- 0.402 19.8 -- -- -- --
608.83 1.15 5.94 -- -- 3.32 -- -- 0.105 -- 24.3 579 -- --
935.11 1.43 5.88 -- -- -- -- -- 0.359 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 163.30 wind 9.0 270 < th dose dependent rect. 10 7
2 163.52 temperature 10.0 270 > th dose dependent rect. 9 8
3 163.74 wind 7.0 270 < th dose independent rect. 9 8
7 164.13 wind 7.0 270 < th dose independent rect. 11 16
12 164.34 temperature 30.0 90 < th dose dependent rect. 8 14
15 164.45 temperature 10.0 10 > th dose dependent rect. 12 17
16 164.49 temperature 30.0 270 < th dose dependent rect. 5 16
22 164.69 wind 7.0 10 < th dose independent rect. 13 16
35 165.04 temperature 10.0 270 > th dose dependent rect. 10 17
76 165.75 temperature 30.0 270 < th dose independent rect. 4 17
90 165.94 temperature 25.0 90 > th dose dependent rect. 10 10
91 165.94 temperature 25.0 90 > th dose dependent rect. 10 19
92 165.98 temperature 25.0 90 > th dose dependent rect. 10 14
106 166.06 wind 7.0 270 < th dose independent rect. 22 18
115 166.14 wind 7.0 270 < th dose independent rect. 23 16
117 166.14 radiation 1.0 270 < th dose dependent rect. 21 10
136 166.29 radiation 1.0 270 < th dose independent rect. 21 10
154 166.40 atmosphere 1000.0 90 < th dose dependent rect. 8 7
157 166.43 wind 1.0 90 > th dose independent rect. 12 17
164 166.48 radiation 30.0 10 < th dose dependent sin 8 NA
168 166.52 temperature 25.0 270 > th dose independent rect. 10 7
169 166.52 radiation 1.0 90 > th dose independent rect. 4 8
180 166.52 temperature 20.0 10 > th dose dependent rect. 12 8
186 166.54 radiation 10.0 90 < th dose dependent rect. 23 9
187 166.54 temperature 25.0 270 > th dose dependent rect. 19 21
192 166.57 temperature 30.0 270 < th dose dependent sin 23 NA
203 166.62 temperature 25.0 270 > th dose dependent rect. 21 19
215 166.67 temperature 10.0 10 > th dose independent rect. 5 8
217 166.67 atmosphere 995.0 10 > th dose independent rect. 5 8
218 166.67 atmosphere 1015.0 10 < th dose independent rect. 5 8
219 166.67 temperature 10.0 10 > th dose independent rect. 13 16
223 166.68 precipitation 0.1 10 < th dose independent rect. 5 8
224 166.68 precipitation 0.1 10 < th dose dependent rect. 5 8
230 166.70 atmosphere 1010.0 270 < th dose independent rect. 15 8
239 166.73 wind 7.0 90 < th dose independent rect. 12 7
246 166.76 radiation 40.0 270 < th dose independent rect. 5 17
248 166.76 temperature 15.0 90 > th dose dependent rect. 12 7
256 166.79 temperature 25.0 90 < th dose independent rect. 8 14
257 166.79 wind 9.0 270 < th dose dependent rect. 10 18
270 166.86 wind 5.0 270 < th dose independent rect. 11 4
272 166.87 temperature 25.0 90 > th dose independent rect. 12 7
279 166.89 temperature 25.0 270 > th dose dependent sin 1 NA
284 166.91 precipitation 0.1 10 < th dose independent rect. 13 16
289 166.91 precipitation 0.1 10 < th dose dependent rect. 13 16
301 166.97 wind 9.0 10 < th dose independent rect. 5 8
319 167.00 atmosphere 1000.0 10 < th dose dependent rect. 9 6
327 167.01 radiation 20.0 10 < th dose dependent rect. 22 11
329 167.02 humidity 60.0 10 > th dose independent rect. 5 8
330 167.02 temperature 25.0 90 > th dose dependent sin 20 NA
345 167.06 temperature 25.0 10 > th dose dependent rect. 12 12
367 167.13 humidity 60.0 270 > th dose independent rect. 17 17
395 167.21 humidity 60.0 10 > th dose independent rect. 6 17
410 167.24 temperature 20.0 90 > th dose independent rect. 5 7
440 167.29 wind 5.0 270 < th dose independent rect. 21 8
470 167.34 atmosphere 1015.0 90 < th dose dependent rect. 12 5
474 167.35 precipitation 0.1 90 < th dose independent rect. 5 7
476 167.35 precipitation 0.1 90 < th dose independent rect. 12 17
479 167.35 precipitation 0.1 90 < th dose dependent rect. 5 7
480 167.35 precipitation 0.1 90 < th dose dependent rect. 12 17
487 167.37 temperature 10.0 90 > th dose independent rect. 5 7
489 167.37 atmosphere 995.0 90 > th dose independent rect. 5 7
491 167.37 atmosphere 1015.0 90 < th dose independent rect. 5 7
494 167.37 temperature 10.0 90 > th dose independent rect. 12 17
503 167.39 radiation 1.0 10 > th dose independent rect. 5 8
528 167.43 temperature 30.0 270 < th dose independent rect. 14 22
539 167.45 radiation 1.0 10 > th dose dependent sin 9 NA
549 167.47 atmosphere 1015.0 270 < th dose dependent rect. 12 2
556 167.48 atmosphere 1015.0 270 < th dose independent rect. 5 16
559 167.49 temperature 25.0 10 > th dose independent rect. 12 8
562 167.50 temperature 30.0 270 < th dose independent rect. 17 16
563 167.50 temperature 30.0 270 < th dose independent rect. 16 18
571 167.52 temperature 15.0 270 > th dose independent rect. 9 8
579 167.53 atmosphere 1015.0 90 < th dose dependent rect. 12 7
589 167.55 atmosphere 1015.0 270 < th dose independent rect. 17 17
593 167.56 humidity 50.0 90 > th dose independent rect. 5 7
650 167.64 radiation 40.0 270 < th dose independent rect. 17 17
662 167.65 wind 9.0 270 < th dose dependent rect. 22 17
667 167.66 wind 9.0 90 < th dose independent rect. 5 7
714 167.73 humidity 50.0 270 > th dose dependent rect. 17 17
731 167.78 humidity 50.0 270 > th dose dependent rect. 5 16
763 167.82 atmosphere 995.0 10 > th dose independent rect. 13 16
780 167.84 atmosphere 1000.0 270 > th dose independent rect. 5 5
784 167.84 atmosphere 1015.0 10 < th dose dependent rect. 12 7
826 167.91 precipitation 0.1 270 < th dose independent rect. 10 18
832 167.91 precipitation 0.1 270 < th dose dependent rect. 10 18
834 167.92 humidity 90.0 30 < th dose independent rect. 6 7
850 167.94 radiation 40.0 270 < th dose independent rect. 4 7
887 168.00 temperature 10.0 270 > th dose independent rect. 21 8
888 168.00 temperature 30.0 270 < th dose independent rect. 21 8
889 168.00 humidity 50.0 270 > th dose independent rect. 21 8
892 168.00 atmosphere 995.0 270 > th dose independent rect. 21 8
893 168.00 radiation 20.0 270 < th dose independent rect. 21 8
897 168.00 temperature 10.0 270 > th dose independent rect. 5 16
898 168.00 temperature 10.0 10 > th dose dependent rect. 5 7
904 168.01 radiation 1.0 270 > th dose independent rect. 10 7
905 168.01 precipitation 0.1 270 < th dose independent rect. 10 7
909 168.01 precipitation 0.1 270 < th dose dependent rect. 10 7
936 168.03 precipitation 0.1 270 < th dose independent rect. 21 8
943 168.03 precipitation 0.1 270 < th dose dependent rect. 21 8
951 168.04 atmosphere 1015.0 270 < th dose independent rect. 10 7
954 168.04 temperature 10.0 270 > th dose independent rect. 17 17
978 168.06 humidity 60.0 270 > th dose independent rect. 4 17
995 168.08 atmosphere 995.0 90 > th dose dependent rect. 6 16