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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0124700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.09 (0.0364) R2 : 0.731
β1 : 2.08 (0.134) R2dD : 0.149 R2D : 0.083
β2 : 2.76 (0.0924) R2dC : 0.528 R2C : 0.492
β3 : -- (--) R2dE : -- R2E : --
β4 : 3.09 (0.396) R2dD*C : 0.0361 R2D*C : 0.0158
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.905 (0.0776) R2dN8 : 0.107 R2N8 : 0.0335
σ : 0.684
deviance : 213.14
__
_____
C
peak time of C : 20
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
205.51 0.674 4.02 2.24 2.76 -0.717 3.1 -2.27 0.911 20 19.81 4115 -- --
210.13 0.675 4.1 2.06 2.76 -0.312 3.28 -- 0.848 19.9 24.8 2600 -- --
233.05 0.711 4.01 2.21 2.74 -0.665 -- -2.33 0.929 20 20 3650 -- --
238.24 0.719 4.11 1.94 2.76 -0.329 -- -- 0.831 19.9 24.97 2425 -- --
637.7 1.18 4 2.25 -- -0.534 -- -1.96 0.902 -- 25 3621 -- --
213.14 0.684 4.09 2.08 2.76 -- 3.09 -- 0.905 20 -- -- -- --
241.57 0.728 4.09 1.99 2.76 -- -- -- 0.907 20 -- -- -- --
635.29 1.17 3.98 1.67 -- -0.8 -- -- 0.795 -- 25.2 3592 -- --
254.42 0.743 4.23 -- 2.76 -1.48 -- -- 0.277 20 19.4 47520 -- --
657.01 1.2 4.02 1.97 -- -- -- -- 0.873 -- -- -- -- --
346.23 0.87 4.14 -- 2.74 -- -- -- 0.685 20.1 -- -- -- --
665.92 1.2 4.17 -- -- -1.44 -- -- 0.185 -- 21.03 47520 -- --
759.05 1.29 4.06 -- -- -- -- -- 0.655 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 188.97 temperature 20.0 30 > th dose dependent rect. 2 1
4 189.08 atmosphere 1005.0 30 > th dose dependent rect. 2 1
5 189.09 temperature 20.0 30 > th dose independent rect. 2 1
6 189.21 atmosphere 1015.0 30 < th dose dependent rect. 2 1
7 189.27 wind 3.0 30 < th dose independent rect. 2 1
10 189.28 wind 7.0 30 < th dose dependent rect. 2 1
13 189.29 temperature 10.0 30 > th dose independent rect. 2 1
15 189.29 temperature 30.0 30 < th dose independent rect. 2 1
16 189.29 humidity 50.0 30 > th dose independent rect. 2 1
19 189.29 atmosphere 995.0 30 > th dose independent rect. 2 1
20 189.29 atmosphere 1010.0 30 < th dose independent rect. 2 1
22 189.29 radiation 1.0 30 < th dose independent rect. 2 1
27 189.29 precipitation 0.1 30 < th dose independent rect. 2 1
28 189.29 temperature 10.0 30 > th dose independent rect. 3 23
29 189.29 radiation 1.0 30 < th dose dependent rect. 2 1
34 189.29 precipitation 0.1 30 < th dose dependent rect. 2 1
37 189.49 atmosphere 1005.0 30 > th dose independent rect. 2 1
38 189.49 humidity 50.0 30 > th dose dependent rect. 2 1
52 190.47 temperature 30.0 30 < th dose dependent rect. 2 1
53 190.67 wind 1.0 30 > th dose independent rect. 2 1
98 193.88 wind 9.0 1440 < th dose independent rect. 3 1
99 193.88 temperature 10.0 1440 > th dose independent rect. 3 1
102 193.88 temperature 30.0 1440 < th dose independent rect. 3 1
106 193.88 humidity 50.0 1440 > th dose independent rect. 3 1
115 193.88 atmosphere 995.0 1440 > th dose independent rect. 3 1
116 193.88 radiation 1.0 1440 < th dose independent rect. 3 1
136 193.88 temperature 10.0 1440 > th dose independent rect. 4 23
139 193.88 radiation 1.0 1440 < th dose dependent rect. 3 1
163 195.85 temperature 25.0 90 > th dose dependent rect. 1 3
168 196.83 wind 9.0 30 < th dose independent rect. 3 23
169 197.08 precipitation 0.1 30 < th dose independent rect. 3 23
170 197.08 precipitation 0.1 30 < th dose dependent rect. 3 23
177 198.41 atmosphere 995.0 30 > th dose independent rect. 3 23
195 200.45 temperature 25.0 10 > th dose independent rect. 13 9
202 201.01 temperature 20.0 10 > th dose dependent rect. 13 9
205 201.04 atmosphere 1005.0 90 > th dose dependent rect. 1 4
208 201.20 temperature 25.0 270 > th dose independent rect. 10 10
212 201.27 atmosphere 1000.0 90 < th dose independent rect. 11 11
214 201.40 atmosphere 1010.0 10 < th dose dependent rect. 12 10
216 201.48 atmosphere 1000.0 10 < th dose independent rect. 12 11
221 201.64 atmosphere 1005.0 10 > th dose dependent rect. 2 3
226 201.68 atmosphere 1005.0 270 > th dose dependent rect. 1 2
237 201.82 temperature 20.0 10 > th dose dependent rect. 2 3
260 202.14 radiation 40.0 10 < th dose dependent rect. 10 16
262 202.17 atmosphere 1010.0 270 < th dose dependent rect. 10 9
298 202.76 atmosphere 1000.0 30 > th dose independent rect. 8 17
328 202.97 temperature 30.0 720 > th dose dependent rect. 11 1
336 203.04 atmosphere 1000.0 10 > th dose independent rect. 10 16
337 203.04 temperature 30.0 720 > th dose dependent rect. 10 3
362 203.20 humidity 50.0 30 > th dose independent rect. 3 23
381 203.34 temperature 25.0 30 > th dose independent rect. 22 15
421 203.58 wind 3.0 1440 < th dose dependent rect. 11 1
446 203.71 atmosphere 1010.0 10 < th dose independent rect. 2 6
451 203.76 wind 3.0 720 > th dose dependent rect. 10 2
465 203.85 temperature 30.0 720 > th dose independent rect. 10 1
504 203.98 radiation 30.0 10 < th dose independent rect. 10 16
533 204.05 atmosphere 1000.0 10 > th dose independent rect. 6 20
536 204.05 temperature 25.0 10 > th dose dependent rect. 15 23
568 204.22 wind 5.0 720 > th dose independent rect. 10 2
572 204.23 temperature 25.0 1440 > th dose independent rect. 1 1
574 204.23 humidity 80.0 4320 < th dose dependent rect. 1 7
583 204.26 atmosphere 1000.0 10 < th dose independent rect. 8 15
584 204.27 atmosphere 1000.0 10 < th dose independent rect. 12 6
604 204.33 atmosphere 1010.0 270 < th dose dependent sin 22 NA
619 204.37 temperature 25.0 10 > th dose independent rect. 4 18
620 204.37 temperature 30.0 720 > th dose dependent sin 8 NA
624 204.38 temperature 25.0 10 > th dose independent rect. 22 6
625 204.38 atmosphere 1010.0 270 < th dose dependent rect. 13 1
633 204.41 radiation 40.0 10 < th dose dependent rect. 8 18
669 204.51 temperature 25.0 1440 < th dose independent rect. 1 1
685 204.57 atmosphere 1010.0 10 < th dose dependent sin 20 NA
694 204.58 temperature 20.0 720 > th dose dependent rect. 11 2
705 204.61 atmosphere 1000.0 270 > th dose dependent rect. 23 6
706 204.62 atmosphere 1005.0 10 < th dose dependent rect. 12 6
730 204.68 humidity 90.0 30 < th dose independent rect. 13 9
741 204.70 temperature 20.0 10 > th dose dependent rect. 4 18
753 204.73 temperature 20.0 720 > th dose dependent rect. 10 4
776 204.76 temperature 25.0 90 > th dose independent rect. 4 18
784 204.78 radiation 30.0 10 < th dose independent rect. 8 18
791 204.78 atmosphere 995.0 270 > th dose dependent rect. 6 16
798 204.80 atmosphere 1000.0 90 > th dose independent rect. 1 7
842 204.88 temperature 25.0 270 > th dose independent sin 22 NA
863 204.91 wind 3.0 1440 > th dose independent rect. 2 1
872 204.92 atmosphere 995.0 90 > th dose dependent rect. 1 7
881 204.93 wind 1.0 10 > th dose independent rect. 8 18
886 204.93 temperature 20.0 10 > th dose dependent rect. 2 20
890 204.94 wind 3.0 30 < th dose dependent rect. 2 3
893 204.94 atmosphere 1010.0 720 < th dose dependent rect. 7 7
896 204.95 atmosphere 1000.0 10 > th dose independent rect. 2 6
966 205.02 temperature 25.0 10 > th dose dependent rect. 10 23
967 205.03 atmosphere 1000.0 30 < th dose independent sin 21 NA
991 205.05 temperature 25.0 10 > th dose dependent rect. 19 23
998 205.07 atmosphere 1000.0 10 > th dose independent sin 20 NA