Os08g0197500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os08g0197500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.51 | 0.403 | 9.44 | 2.07 | 1.49 | -1.89 | -1.87 | -1.14 | 0.25 | 20.7 | 26.85 | 731 | -- | -- |
| 75.86 | 0.406 | 9.44 | 1.97 | 1.52 | -1.81 | -1.8 | -- | 0.3 | 20.6 | 31.09 | 877 | -- | -- |
| 83.15 | 0.425 | 9.47 | 1.93 | 1.51 | -1.8 | -- | 0.0583 | 0.214 | 20.7 | 26.98 | 723 | -- | -- |
| 83.13 | 0.425 | 9.47 | 1.92 | 1.51 | -1.82 | -- | -- | 0.203 | 20.7 | 26.87 | 726 | -- | -- |
| 178.47 | 0.622 | 9.48 | 1.3 | -- | -3.16 | -- | 1.43 | 0.113 | -- | 42.98 | 674 | -- | -- |
| 123.75 | 0.522 | 9.39 | 2.38 | 1.85 | -- | -1.56 | -- | 0.606 | 20.9 | -- | -- | -- | -- |
| 131.94 | 0.538 | 9.39 | 2.44 | 1.85 | -- | -- | -- | 0.606 | 20.9 | -- | -- | -- | -- |
| 176.8 | 0.619 | 9.45 | 1.69 | -- | -3.05 | -- | -- | 0.074 | -- | 30.92 | 682 | -- | -- |
| 112.34 | 0.494 | 9.59 | -- | 1.83 | -2.14 | -- | -- | -0.303 | 20.8 | 64.75 | 47520 | -- | -- |
| 327.5 | 0.846 | 9.34 | 2.44 | -- | -- | -- | -- | 0.593 | -- | -- | -- | -- | -- |
| 288.49 | 0.795 | 9.45 | -- | 1.85 | -- | -- | -- | 0.335 | 21 | -- | -- | -- | -- |
| 243.93 | 0.727 | 9.51 | -- | -- | -3.41 | -- | -- | -0.0537 | -- | 30.6 | 723 | -- | -- |
| 484.13 | 1.03 | 9.4 | -- | -- | -- | -- | -- | 0.323 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.02 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 4 | 66.05 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 22 | 68.49 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 17 |
| 37 | 69.07 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 126 | 71.57 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 17 |
| 136 | 71.79 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 19 |
| 397 | 74.24 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 410 | 74.38 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 523 | 75.41 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 8 |
| 543 | 75.56 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 648 | 76.23 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 750 | 77.04 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 759 | 77.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 14 |
| 773 | 77.17 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 10 |
| 808 | 77.31 | temperature | 20 | 1440 | > th | dose dependent | rect. | 9 | 21 |
| 809 | 77.32 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 11 |
| 903 | 77.54 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 937 | 77.65 | temperature | 25 | 1440 | < th | dose independent | rect. | 8 | 18 |
| 960 | 77.70 | temperature | 25 | 1440 | > th | dose independent | sin | 19 | NA |
| 964 | 77.72 | temperature | 25 | 1440 | < th | dose independent | sin | 19 | NA |
| 965 | 77.72 | temperature | 25 | 1440 | > th | dose independent | rect. | 8 | 18 |
| 969 | 77.73 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 15 |
| 980 | 77.74 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 23 |