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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0125300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.26 (0.0342) R2 : 0.629
β1 : 2.3 (0.129) R2dD : 0.281 R2D : 0.157
β2 : 1.98 (0.0886) R2dC : 0.43 R2C : 0.341
β3 : -1.11 (0.104) R2dE : 0.114 R2E : -0.0546
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.352 (0.0769) R2dN8 : 0.0261 R2N8 : -0.0433
σ : 0.631
deviance : 183.67
__
_____
C
peak time of C : 16.8
E
wheather : temperature
threshold : 21.1
memory length : 470
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
181.01 0.632 5.25 2.45 2 -1.04 -0.553 0.871 0.376 16.9 21 468 -- --
184.18 0.632 5.26 2.36 1.96 -1.07 -0.386 -- 0.375 16.8 21.1 475 -- --
181.7 0.628 5.25 2.43 1.99 -1.06 -- 0.763 0.369 16.9 21 475 -- --
183.67 0.631 5.26 2.3 1.98 -1.11 -- -- 0.352 16.8 21.1 470 -- --
361.47 0.885 5.23 2.53 -- -1.05 -- 1.21 0.367 -- 21.4 1270 -- --
227.68 0.707 5.34 1.85 1.84 -- -0.382 -- 0.0476 16.7 -- -- -- --
228.05 0.707 5.34 1.85 1.84 -- -- -- 0.0456 16.7 -- -- -- --
366.91 0.892 5.25 2.31 -- -1.22 -- -- 0.303 -- 20.8 1175 -- --
303.59 0.812 5.35 -- 1.88 -0.507 -- -- -0.00548 16.8 22.39 405 -- --
407.59 0.943 5.32 1.78 -- -- -- -- -0.00238 -- -- -- -- --
318.34 0.835 5.38 -- 1.81 -- -- -- -0.161 16.7 -- -- -- --
471.98 1.02 5.42 -- -- 0.456 -- -- -0.432 -- 25.01 1230 -- --
491.27 1.03 5.37 -- -- -- -- -- -0.2 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 171.45 temperature 25 270 < th dose dependent sin 7 NA
4 174.17 temperature 25 270 < th dose dependent rect. 22 12
6 175.17 temperature 30 720 < th dose dependent rect. 20 10
7 175.26 temperature 30 720 < th dose dependent rect. 19 13
8 175.38 temperature 20 270 < th dose independent sin 6 NA
15 175.51 temperature 20 270 < th dose independent rect. 4 6
17 175.75 temperature 20 270 < th dose independent rect. 5 3
18 175.88 temperature 25 90 < th dose dependent rect. 5 6
19 176.07 temperature 10 720 > th dose dependent rect. 19 9
30 176.54 temperature 20 270 > th dose independent sin 5 NA
45 177.45 temperature 30 720 < th dose dependent rect. 20 7
73 178.32 temperature 30 720 < th dose dependent sin 11 NA
77 178.65 temperature 25 270 < th dose dependent rect. 3 7
103 179.16 temperature 25 720 < th dose dependent rect. 23 2
116 179.62 temperature 20 270 < th dose independent rect. 22 13
148 180.29 temperature 20 270 > th dose independent rect. 24 11
151 180.32 temperature 10 720 > th dose dependent rect. 16 15
245 181.72 temperature 10 720 > th dose dependent sin 12 NA
257 181.95 temperature 10 270 > th dose dependent sin 8 NA
263 182.04 temperature 25 270 < th dose dependent rect. 1 10
296 182.45 temperature 20 720 < th dose independent rect. 19 16
338 182.91 temperature 20 720 > th dose independent rect. 17 19
368 183.25 temperature 20 270 > th dose independent rect. 24 22
407 183.66 temperature 20 270 > th dose independent rect. 2 15
411 183.69 humidity 80 43200 < th dose independent rect. 22 4
416 183.73 humidity 80 43200 < th dose independent rect. 23 2
456 184.01 humidity 80 43200 < th dose dependent rect. 24 1
470 184.10 humidity 80 43200 < th dose dependent rect. 22 3
472 184.12 humidity 80 43200 > th dose independent rect. 24 1
490 184.22 humidity 80 43200 < th dose dependent rect. 21 6
508 184.33 humidity 80 43200 > th dose independent rect. 22 6
637 184.96 humidity 80 43200 > th dose independent rect. 3 1
642 185.01 humidity 80 43200 < th dose independent rect. 3 1
644 185.03 temperature 20 720 < th dose independent sin 10 NA
698 185.32 temperature 25 270 < th dose dependent rect. 3 23
737 185.52 humidity 90 14400 < th dose independent rect. 17 10
739 185.52 temperature 15 270 > th dose dependent rect. 24 10
762 185.61 temperature 20 270 < th dose independent rect. 3 18
774 185.68 temperature 25 270 < th dose dependent no NA NA
838 186.00 radiation 1 14400 > th dose independent rect. 18 15
846 186.04 humidity 90 14400 < th dose independent sin 14 NA
847 186.04 humidity 90 14400 < th dose independent rect. 17 14
849 186.05 temperature 20 270 < th dose independent rect. 1 20
888 186.20 temperature 20 270 < th dose independent rect. 1 22
919 186.33 radiation 1 14400 < th dose independent rect. 18 16
946 186.45 radiation 1 14400 > th dose independent rect. 4 6
957 186.45 wind 3 43200 < th dose dependent rect. 9 1
971 186.46 humidity 90 14400 < th dose independent rect. 18 18
976 186.47 radiation 1 14400 < th dose independent rect. 24 10
981 186.47 humidity 90 14400 < th dose independent rect. 11 19
986 186.48 radiation 1 14400 < th dose independent rect. 4 6
987 186.48 radiation 1 14400 < th dose independent rect. 2 7