BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0125300 Os10g0125300|J075096M03
(78 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0125300 Conserved hypothetical protein 161 8e-41
Os10g0128200 Cyclin-like F-box domain containing protein 74 3e-14
Os10g0126800 Cyclin-like F-box domain containing protein 72 1e-13
Os10g0126000 Cyclin-like F-box domain containing protein 70 3e-13
Os10g0127000 Conserved hypothetical protein 70 3e-13
Os10g0127900 Conserved hypothetical protein 70 4e-13
Os10g0128600 Cyclin-like F-box domain containing protein 64 3e-11
>Os10g0125300 Conserved hypothetical protein
Length = 78
Score = 161 bits (408), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 78/78 (100%), Positives = 78/78 (100%)
Query: 1 VHTRRIVGKLKEKSFTCERLKVVEVICIGDDPLVNCVEEFFFNSGMTSLQIRINHLDGYE 60
VHTRRIVGKLKEKSFTCERLKVVEVICIGDDPLVNCVEEFFFNSGMTSLQIRINHLDGYE
Sbjct: 1 VHTRRIVGKLKEKSFTCERLKVVEVICIGDDPLVNCVEEFFFNSGMTSLQIRINHLDGYE 60
Query: 61 LYEPRLYRDEYRRRQYMG 78
LYEPRLYRDEYRRRQYMG
Sbjct: 61 LYEPRLYRDEYRRRQYMG 78
>Os10g0128200 Cyclin-like F-box domain containing protein
Length = 421
Score = 73.6 bits (179), Expect = 3e-14, Method: Composition-based stats.
Identities = 34/60 (56%), Positives = 45/60 (75%)
Query: 4 RRIVGKLKEKSFTCERLKVVEVICIGDDPLVNCVEEFFFNSGMTSLQIRINHLDGYELYE 63
+RI+G+L+E+SFTCE LK+VEVIC+ +DP V VE+FF SGMTS+Q I H E Y+
Sbjct: 355 QRIIGELEERSFTCEHLKIVEVICLENDPQVIGVEDFFVRSGMTSVQFHIKHWRKDEEYK 414
>Os10g0126800 Cyclin-like F-box domain containing protein
Length = 454
Score = 72.0 bits (175), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/52 (61%), Positives = 41/52 (78%)
Query: 4 RRIVGKLKEKSFTCERLKVVEVICIGDDPLVNCVEEFFFNSGMTSLQIRINH 55
+RI+G+++E+SFTCE L VEVIC+ DDPLVN V FF NSGM+S+QI I
Sbjct: 396 QRIIGQIEERSFTCEHLTSVEVICLEDDPLVNDVVNFFVNSGMSSVQIHIKQ 447
>Os10g0126000 Cyclin-like F-box domain containing protein
Length = 410
Score = 70.1 bits (170), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 41/52 (78%)
Query: 4 RRIVGKLKEKSFTCERLKVVEVICIGDDPLVNCVEEFFFNSGMTSLQIRINH 55
+RI+G+L E+SFTC LK+VEVIC +DPL+N + +FF +SGMT+ QI I H
Sbjct: 359 QRIIGELTERSFTCGHLKIVEVICSENDPLINHLVDFFVSSGMTTAQIHIKH 410
>Os10g0127000 Conserved hypothetical protein
Length = 157
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 46/70 (65%)
Query: 3 TRRIVGKLKEKSFTCERLKVVEVICIGDDPLVNCVEEFFFNSGMTSLQIRINHLDGYELY 62
+ RIVG+L E+SFTCE LK+VEV C+ DDP V VE+FF ++GM S+Q I H Y+
Sbjct: 88 SPRIVGELMERSFTCEHLKIVEVKCLEDDPQVISVEDFFASNGMASVQFDIKHWGQYKDE 147
Query: 63 EPRLYRDEYR 72
P R E R
Sbjct: 148 LPAFIRYEER 157
>Os10g0127900 Conserved hypothetical protein
Length = 292
Score = 70.1 bits (170), Expect = 4e-13, Method: Composition-based stats.
Identities = 34/66 (51%), Positives = 42/66 (63%)
Query: 3 TRRIVGKLKEKSFTCERLKVVEVICIGDDPLVNCVEEFFFNSGMTSLQIRINHLDGYELY 62
+RRI+G+L E SFTCE L VEVIC +DP V V++FF +SGMTS+Q I H Y
Sbjct: 225 SRRIIGELTEISFTCEHLNTVEVICSENDPQVITVQDFFVSSGMTSVQFHIKHWSPYAND 284
Query: 63 EPRLYR 68
P R
Sbjct: 285 LPAFIR 290
>Os10g0128600 Cyclin-like F-box domain containing protein
Length = 453
Score = 63.5 bits (153), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/49 (59%), Positives = 37/49 (75%)
Query: 5 RIVGKLKEKSFTCERLKVVEVICIGDDPLVNCVEEFFFNSGMTSLQIRI 53
RI+GKL+++SFTCE L VEV+C DPLV V FF NSG+TS Q++I
Sbjct: 401 RIIGKLEDRSFTCEHLTRVEVVCSEGDPLVKDVVNFFVNSGLTSAQVQI 449
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.145 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,657,681
Number of extensions: 89411
Number of successful extensions: 201
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 7
Length of query: 78
Length of database: 17,035,801
Length adjustment: 49
Effective length of query: 29
Effective length of database: 14,477,315
Effective search space: 419842135
Effective search space used: 419842135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)