Os11g0209200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ribosomal RNA apurinic site specific lyase.
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Os11g0209200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ribosomal RNA apurinic site specific lyase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.67 | 0.347 | 8.41 | 1.66 | 1.81 | 0.528 | 0.0131 | -0.00579 | 0.227 | 20 | 1.1 | 1446 | -- | -- |
| 54.67 | 0.344 | 8.41 | 1.66 | 1.81 | 0.528 | 0.0129 | -- | 0.227 | 20 | 1.1 | 1445 | -- | -- |
| 54.67 | 0.344 | 8.41 | 1.66 | 1.81 | 0.528 | -- | -0.00562 | 0.227 | 20 | 1.1 | 1446 | -- | -- |
| 54.67 | 0.344 | 8.41 | 1.66 | 1.81 | 0.529 | -- | -- | 0.227 | 20 | 1.1 | 1445 | -- | -- |
| 181.77 | 0.631 | 8.38 | 1.55 | -- | 0.723 | -- | -0.434 | 0.155 | -- | 1.1 | 1446 | -- | -- |
| 58.36 | 0.358 | 8.43 | 1.55 | 1.83 | -- | -0.00634 | -- | 0.159 | 20 | -- | -- | -- | -- |
| 58.36 | 0.358 | 8.43 | 1.55 | 1.83 | -- | -- | -- | 0.159 | 20 | -- | -- | -- | -- |
| 182.99 | 0.633 | 8.38 | 1.55 | -- | 0.72 | -- | -- | 0.153 | -- | 1.1 | 1446 | -- | -- |
| 107.45 | 0.483 | 8.44 | -- | 1.82 | 0.683 | -- | -- | 0.0491 | 19.9 | 9.704 | 5856 | -- | -- |
| 240.85 | 0.725 | 8.38 | 1.54 | -- | -- | -- | -- | 0.136 | -- | -- | -- | -- | -- |
| 122.09 | 0.517 | 8.47 | -- | 1.82 | -- | -- | -- | -0.0138 | 20.1 | -- | -- | -- | -- |
| 246.11 | 0.733 | 8.42 | -- | -- | 0.715 | -- | -- | -0.0188 | -- | 1.1 | 1446 | -- | -- |
| 303.2 | 0.813 | 8.42 | -- | -- | -- | -- | -- | -0.0343 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.95 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 15 |
| 6 | 47.41 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 10 |
| 7 | 47.48 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 22 | 8 |
| 11 | 47.94 | temperature | 10.0 | 10 | > th | dose dependent | sin | 6 | NA |
| 12 | 47.95 | temperature | 30.0 | 10 | < th | dose dependent | sin | 6 | NA |
| 18 | 48.25 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 5 | 8 |
| 25 | 48.34 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 8 |
| 33 | 48.56 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 21 | 16 |
| 61 | 49.01 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 8 |
| 68 | 49.11 | radiation | 30.0 | 30 | < th | dose dependent | sin | 7 | NA |
| 76 | 49.25 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 7 |
| 119 | 49.59 | radiation | 10.0 | 30 | > th | dose independent | rect. | 6 | 7 |
| 143 | 49.66 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 22 | 16 |
| 146 | 49.68 | temperature | 20.0 | 10 | > th | dose independent | rect. | 5 | 8 |
| 164 | 49.74 | radiation | 1.0 | 270 | < th | dose independent | rect. | 22 | 15 |
| 167 | 49.75 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 16 |
| 221 | 50.00 | radiation | 10.0 | 30 | > th | dose independent | sin | 6 | NA |
| 230 | 50.04 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 2 | 11 |
| 274 | 50.17 | wind | 7.0 | 270 | < th | dose independent | rect. | 12 | 16 |
| 277 | 50.19 | radiation | 1.0 | 270 | < th | dose dependent | sin | 8 | NA |
| 307 | 50.29 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 20 | 5 |
| 342 | 50.42 | humidity | 90.0 | 30 | < th | dose independent | rect. | 6 | 7 |
| 360 | 50.44 | radiation | 1.0 | 270 | < th | dose independent | sin | 9 | NA |
| 369 | 50.46 | radiation | 1.0 | 30 | > th | dose dependent | sin | 8 | NA |
| 409 | 50.55 | wind | 7.0 | 270 | < th | dose independent | rect. | 10 | 8 |
| 423 | 50.62 | radiation | 1.0 | 270 | > th | dose independent | sin | 8 | NA |
| 472 | 50.81 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 16 |
| 505 | 50.87 | wind | 7.0 | 30 | < th | dose independent | rect. | 13 | 17 |
| 525 | 50.91 | wind | 1.0 | 30 | > th | dose independent | rect. | 13 | 17 |
| 529 | 50.92 | temperature | 20.0 | 30 | > th | dose independent | rect. | 19 | 18 |
| 540 | 50.95 | temperature | 20.0 | 10 | > th | dose independent | rect. | 21 | 16 |
| 585 | 51.06 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 14 |
| 603 | 51.09 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 7 |
| 686 | 51.24 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 17 |
| 690 | 51.24 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 17 |
| 715 | 51.27 | humidity | 60.0 | 270 | > th | dose independent | rect. | 17 | 17 |
| 765 | 51.34 | wind | 1.0 | 270 | > th | dose independent | rect. | 22 | 8 |
| 786 | 51.38 | wind | 1.0 | 270 | > th | dose independent | rect. | 24 | 16 |
| 818 | 51.45 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 7 |
| 821 | 51.45 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 7 |
| 831 | 51.48 | wind | 9.0 | 270 | < th | dose dependent | rect. | 10 | 8 |
| 836 | 51.49 | radiation | 1.0 | 270 | > th | dose independent | rect. | 10 | 8 |
| 843 | 51.50 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 22 | 8 |
| 861 | 51.54 | wind | 9.0 | 270 | < th | dose dependent | rect. | 11 | 6 |
| 868 | 51.56 | temperature | 15.0 | 270 | > th | dose independent | rect. | 16 | 7 |
| 892 | 51.58 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 13 | 8 |
| 894 | 51.59 | wind | 9.0 | 270 | < th | dose independent | rect. | 4 | 7 |
| 896 | 51.59 | temperature | 10.0 | 270 | > th | dose independent | rect. | 10 | 7 |
| 897 | 51.59 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 7 |
| 899 | 51.59 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 7 |
| 900 | 51.59 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 10 | 7 |
| 902 | 51.59 | wind | 7.0 | 270 | < th | dose independent | rect. | 23 | 17 |
| 903 | 51.59 | temperature | 10.0 | 270 | > th | dose independent | rect. | 11 | 17 |
| 908 | 51.60 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 10 | 7 |
| 910 | 51.60 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 10 | 7 |
| 917 | 51.61 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 7 |
| 951 | 51.65 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 17 | 6 |
| 987 | 51.69 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 8 |