Os08g0197300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat 2 containing protein.
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Os08g0197300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat 2 containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 109.15 | 0.491 | 4.87 | 2.37 | 3.04 | -0.898 | 1.48 | -0.659 | 0.346 | 20.5 | 28.5 | 338 | -- | -- |
| 109.43 | 0.487 | 4.88 | 2.29 | 3.03 | -0.919 | 1.58 | -- | 0.319 | 20.5 | 28.3 | 341 | -- | -- |
| 115.79 | 0.501 | 4.86 | 2.4 | 3.02 | -0.891 | -- | -1.22 | 0.362 | 20.5 | 28.35 | 342 | -- | -- |
| 116.91 | 0.504 | 4.88 | 2.22 | 3.02 | -0.989 | -- | -- | 0.328 | 20.5 | 28.51 | 355 | -- | -- |
| 461.24 | 1 | 4.82 | 2.89 | -- | -2.36 | -- | -1.39 | -0.0114 | -- | 26.3 | 561 | -- | -- |
| 133.58 | 0.542 | 4.87 | 2.46 | 3.42 | -- | 1.81 | -- | 0.434 | 20 | -- | -- | -- | -- |
| 143.27 | 0.561 | 4.87 | 2.41 | 3.42 | -- | -- | -- | 0.437 | 20 | -- | -- | -- | -- |
| 440.69 | 0.978 | 4.93 | 1.75 | -- | -2.39 | -- | -- | -0.187 | -- | 26.3 | 543 | -- | -- |
| 248.62 | 0.734 | 4.93 | -- | 3.07 | -0.926 | -- | -- | 0.141 | 20.5 | 28.3 | 375 | -- | -- |
| 781.02 | 1.31 | 4.78 | 2.37 | -- | -- | -- | -- | 0.393 | -- | -- | -- | -- | -- |
| 296.11 | 0.805 | 4.93 | -- | 3.4 | -- | -- | -- | 0.168 | 20 | -- | -- | -- | -- |
| 500.64 | 1.04 | 5 | -- | -- | -2.84 | -- | -- | -0.557 | -- | 26.24 | 590 | -- | -- |
| 929.67 | 1.42 | 4.84 | -- | -- | -- | -- | -- | 0.129 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 102.28 | temperature | 30 | 90 | < th | dose dependent | sin | 20 | NA |
| 2 | 102.51 | temperature | 30 | 10 | < th | dose dependent | sin | 19 | NA |
| 8 | 103.29 | temperature | 30 | 90 | < th | dose dependent | rect. | 8 | 15 |
| 45 | 106.35 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 11 |
| 52 | 106.66 | temperature | 20 | 90 | > th | dose dependent | rect. | 12 | 11 |
| 60 | 107.06 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 9 |
| 69 | 107.23 | temperature | 25 | 90 | > th | dose dependent | rect. | 12 | 16 |
| 79 | 107.41 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 7 |
| 89 | 107.55 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 15 |
| 147 | 108.19 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 18 |
| 177 | 108.48 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 12 |
| 185 | 108.55 | temperature | 20 | 10 | > th | dose dependent | sin | 18 | NA |
| 187 | 108.57 | temperature | 25 | 90 | > th | dose independent | rect. | 12 | 9 |
| 191 | 108.63 | temperature | 25 | 270 | > th | dose independent | rect. | 10 | 10 |
| 213 | 108.84 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 14 |
| 217 | 108.86 | temperature | 20 | 90 | > th | dose dependent | sin | 19 | NA |
| 240 | 108.97 | temperature | 25 | 270 | < th | dose independent | sin | 21 | NA |
| 266 | 109.14 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 15 |
| 303 | 109.41 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 6 |
| 310 | 109.49 | temperature | 25 | 720 | > th | dose dependent | rect. | 10 | 4 |
| 314 | 109.52 | temperature | 25 | 90 | < th | dose independent | sin | 19 | NA |
| 335 | 109.67 | temperature | 25 | 10 | > th | dose independent | rect. | 12 | 9 |
| 337 | 109.68 | temperature | 25 | 270 | > th | dose dependent | sin | 22 | NA |
| 376 | 109.95 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 387 | 110.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 6 |
| 403 | 110.13 | temperature | 25 | 10 | < th | dose independent | sin | 19 | NA |
| 448 | 110.36 | temperature | 10 | 90 | > th | dose dependent | sin | 19 | NA |
| 484 | 110.53 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 21 |
| 583 | 111.11 | temperature | 25 | 270 | > th | dose dependent | rect. | 2 | 20 |
| 656 | 111.40 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 760 | 111.86 | temperature | 25 | 10 | < th | dose independent | rect. | 9 | 13 |
| 778 | 111.95 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 6 |
| 862 | 112.29 | temperature | 10 | 10 | > th | dose dependent | sin | 15 | NA |
| 866 | 112.30 | radiation | 40 | 270 | < th | dose independent | rect. | 7 | 15 |
| 957 | 112.70 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 15 |
| 961 | 112.71 | radiation | 40 | 720 | < th | dose independent | rect. | 24 | 18 |