Os02g0188900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os02g0188900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 122.43 | 0.52 | 8.21 | 0.49 | 1.35 | 2.04 | -0.0165 | -0.893 | -0.198 | 3.55 | 23.72 | 4036 | -- | -- |
| 122.54 | 0.516 | 8.24 | 0.392 | 1.33 | 2.35 | -0.0543 | -- | -0.244 | 3.44 | 22.76 | 3879 | -- | -- |
| 122.38 | 0.515 | 8.21 | 0.476 | 1.35 | 2.12 | -- | -0.801 | -0.203 | 3.49 | 23.44 | 3883 | -- | -- |
| 122.48 | 0.515 | 8.24 | 0.397 | 1.34 | 2.37 | -- | -- | -0.248 | 3.5 | 22.66 | 3879 | -- | -- |
| 198.13 | 0.659 | 8.28 | -0.198 | -- | 2.47 | -- | -0.233 | -0.41 | -- | 23.44 | 3883 | -- | -- |
| 201.31 | 0.665 | 8.36 | -0.79 | 1.26 | -- | 0.189 | -- | -0.797 | 3.66 | -- | -- | -- | -- |
| 201.42 | 0.665 | 8.36 | -0.793 | 1.26 | -- | -- | -- | -0.798 | 3.66 | -- | -- | -- | -- |
| 198.22 | 0.659 | 8.29 | -0.225 | -- | 2.49 | -- | -- | -0.415 | -- | 23.44 | 3883 | -- | -- |
| 124.98 | 0.521 | 8.26 | -- | 1.3 | 2.17 | -- | -- | -0.319 | 3.48 | 23.02 | 3482 | -- | -- |
| 288.97 | 0.794 | 8.37 | -0.741 | -- | -- | -- | -- | -0.764 | -- | -- | -- | -- | -- |
| 218.01 | 0.691 | 8.35 | -- | 1.24 | -- | -- | -- | -0.709 | 3.66 | -- | -- | -- | -- |
| 198.78 | 0.659 | 8.28 | -- | -- | 2.55 | -- | -- | -0.374 | -- | 23.58 | 1844 | -- | -- |
| 303.44 | 0.813 | 8.35 | -- | -- | -- | -- | -- | -0.682 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 122.21 | temperature | 25 | 4320 | < th | dose dependent | rect. | 12 | 16 |
| 23 | 122.68 | temperature | 25 | 4320 | < th | dose dependent | sin | 16 | NA |
| 37 | 122.96 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 7 |
| 39 | 122.97 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 49 | 123.09 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 50 | 123.12 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 80 | 123.51 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 11 |
| 128 | 123.96 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 129 | 123.96 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 23 |
| 131 | 123.98 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 139 | 124.01 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 23 |
| 144 | 124.03 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 23 |
| 147 | 124.04 | temperature | 25 | 4320 | < th | dose dependent | rect. | 24 | 23 |
| 152 | 124.07 | temperature | 25 | 4320 | < th | dose dependent | rect. | 15 | 23 |
| 204 | 124.32 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 213 | 124.35 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 246 | 124.48 | temperature | 20 | 4320 | < th | dose dependent | rect. | 20 | 9 |
| 375 | 125.19 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 457 | 125.62 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 492 | 125.77 | temperature | 25 | 4320 | < th | dose dependent | sin | 5 | NA |
| 493 | 125.77 | radiation | 10 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 511 | 125.79 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 4 |
| 569 | 126.01 | temperature | 10 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 680 | 126.38 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 16 |
| 716 | 126.50 | temperature | 15 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 725 | 126.52 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 7 |
| 752 | 126.58 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 912 | 126.90 | temperature | 10 | 4320 | > th | dose dependent | sin | 12 | NA |