BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0485600 Os09g0485600|AK063705
(154 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0485600 Similar to WIP1 protein (Fragment) 240 2e-64
Os08g0504000 Similar to WIP5 protein 234 1e-62
Os06g0612300 Similar to T6J4.5 protein (WIP6 protein) 230 3e-61
Os09g0282300 Similar to WIP1 protein (Fragment) 208 1e-54
Os01g0859100 Similar to WIP1 protein (Fragment) 202 1e-52
Os05g0444200 Similar to T6J4.5 protein (WIP6 protein) 200 3e-52
Os09g0307400 198 2e-51
Os02g0196100 Similar to T6J4.5 protein (WIP6 protein) 192 7e-50
Os04g0165200 Zinc finger, C2H2-type domain containing protein 78 3e-15
Os01g0871200 Zinc finger, C2H2-type domain containing protein 76 8e-15
Os03g0838800 Zinc finger, C2H2-type domain containing protein 72 2e-13
Os08g0562300 Zinc finger, C2H2-type domain containing protein 70 6e-13
Os12g0170400 Zinc finger, C2H2-type domain containing protein 67 6e-12
Os01g0195000 Zinc finger, C2H2-type domain containing protein 65 2e-11
Os02g0572900 Zinc finger, C2H2-type domain containing protein 64 4e-11
>Os09g0485600 Similar to WIP1 protein (Fragment)
Length = 154
Score = 240 bits (613), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 121/154 (78%), Positives = 121/154 (78%)
Query: 1 QMHMWGHGSQYRKGPESLRGIQPTAMLRLPCYCCAAGCRNNIDHPRAKPLKDFRTLQTHY 60
QMHMWGHGSQYRKGPESLRGIQPTAMLRLPCYCCAAGCRNNIDHPRAKPLKDFRTLQTHY
Sbjct: 1 QMHMWGHGSQYRKGPESLRGIQPTAMLRLPCYCCAAGCRNNIDHPRAKPLKDFRTLQTHY 60
Query: 61 KRKHGLKPFLCRKCGKAFAVKGDWRTHEKNCGKLWYCLCGSEFKHKRSLKXXXXXXXXXX 120
KRKHGLKPFLCRKCGKAFAVKGDWRTHEKNCGKLWYCLCGSEFKHKRSLK
Sbjct: 61 KRKHGLKPFLCRKCGKAFAVKGDWRTHEKNCGKLWYCLCGSEFKHKRSLKDHARAFGHGH 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXSSSTAPAARSL 154
SSSTAPAARSL
Sbjct: 121 GALGGAAALDDDDDGAVSDLDHDSSSTAPAARSL 154
>Os08g0504000 Similar to WIP5 protein
Length = 156
Score = 234 bits (598), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 108/110 (98%), Positives = 110/110 (100%)
Query: 1 QMHMWGHGSQYRKGPESLRGIQPTAMLRLPCYCCAAGCRNNIDHPRAKPLKDFRTLQTHY 60
QMHMWGHGSQYRKGPESLRG+QPTAMLRLPCYCCAAGCRNNIDHPRA+PLKDFRTLQTHY
Sbjct: 2 QMHMWGHGSQYRKGPESLRGVQPTAMLRLPCYCCAAGCRNNIDHPRARPLKDFRTLQTHY 61
Query: 61 KRKHGLKPFLCRKCGKAFAVKGDWRTHEKNCGKLWYCLCGSEFKHKRSLK 110
KRKHGLKPFLCRKCGKAFAVKGDWRTHEKNCGKLWYCLCGSEFKHKRSLK
Sbjct: 62 KRKHGLKPFLCRKCGKAFAVKGDWRTHEKNCGKLWYCLCGSEFKHKRSLK 111
>Os06g0612300 Similar to T6J4.5 protein (WIP6 protein)
Length = 445
Score = 230 bits (587), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 103/110 (93%), Positives = 108/110 (98%)
Query: 1 QMHMWGHGSQYRKGPESLRGIQPTAMLRLPCYCCAAGCRNNIDHPRAKPLKDFRTLQTHY 60
QMHMWGHGSQYRKGPESLRG QPTAMLRLPCYCCAAGCRNNIDHPRA+PLKDFRTLQTHY
Sbjct: 294 QMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAAGCRNNIDHPRARPLKDFRTLQTHY 353
Query: 61 KRKHGLKPFLCRKCGKAFAVKGDWRTHEKNCGKLWYCLCGSEFKHKRSLK 110
KRKHG+KPF+CRKCGKAFAV+GDWRTHEKNCGKLWYC CGS+FKHKRSLK
Sbjct: 354 KRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCACGSDFKHKRSLK 403
>Os09g0282300 Similar to WIP1 protein (Fragment)
Length = 306
Score = 208 bits (529), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 93/110 (84%), Positives = 101/110 (91%)
Query: 1 QMHMWGHGSQYRKGPESLRGIQPTAMLRLPCYCCAAGCRNNIDHPRAKPLKDFRTLQTHY 60
QMHMWGHGSQYR+GPESLRG QP AMLRLPC+CCAAGCRNN+DHPRA+PLKDFRTLQTHY
Sbjct: 171 QMHMWGHGSQYRRGPESLRGTQPAAMLRLPCFCCAAGCRNNVDHPRARPLKDFRTLQTHY 230
Query: 61 KRKHGLKPFLCRKCGKAFAVKGDWRTHEKNCGKLWYCLCGSEFKHKRSLK 110
KRKH KPF CRKCGK AV+GDWRTHEKNCG+ W+C CGS+FKHKRSLK
Sbjct: 231 KRKHCAKPFACRKCGKPLAVRGDWRTHEKNCGRRWHCACGSDFKHKRSLK 280
>Os01g0859100 Similar to WIP1 protein (Fragment)
Length = 376
Score = 202 bits (513), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 89/110 (80%), Positives = 98/110 (89%)
Query: 1 QMHMWGHGSQYRKGPESLRGIQPTAMLRLPCYCCAAGCRNNIDHPRAKPLKDFRTLQTHY 60
QMHMWGHG +YRKGPESL+G Q AML+LPCYCCAAGC+NN+ HPRA+PLKDFRTLQTHY
Sbjct: 232 QMHMWGHGREYRKGPESLKGTQTLAMLKLPCYCCAAGCKNNVAHPRARPLKDFRTLQTHY 291
Query: 61 KRKHGLKPFLCRKCGKAFAVKGDWRTHEKNCGKLWYCLCGSEFKHKRSLK 110
KRKHG KPF CR+C K FAVKGDWRTHEKNCGK W+C CGS+FKHKRSL
Sbjct: 292 KRKHGAKPFRCRRCAKPFAVKGDWRTHEKNCGKRWFCACGSDFKHKRSLN 341
>Os05g0444200 Similar to T6J4.5 protein (WIP6 protein)
Length = 389
Score = 200 bits (509), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 91/113 (80%), Positives = 99/113 (87%), Gaps = 3/113 (2%)
Query: 1 QMHMWGHGSQYRKGPESLRGIQPTA---MLRLPCYCCAAGCRNNIDHPRAKPLKDFRTLQ 57
QMHMWGHG +YRKGPESL+G Q TA ML+LPCYCCAAGCRNN+ HPRA+PLKDFRTLQ
Sbjct: 227 QMHMWGHGREYRKGPESLKGTQATATLAMLKLPCYCCAAGCRNNVGHPRARPLKDFRTLQ 286
Query: 58 THYKRKHGLKPFLCRKCGKAFAVKGDWRTHEKNCGKLWYCLCGSEFKHKRSLK 110
THYKRKHG KPF CR+C K FAVKGDWRTHEKNCGK W+C CGS+FKHKRSL
Sbjct: 287 THYKRKHGAKPFACRRCAKPFAVKGDWRTHEKNCGKRWFCACGSDFKHKRSLN 339
>Os09g0307400
Length = 385
Score = 198 bits (503), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 88/117 (75%), Positives = 102/117 (87%), Gaps = 7/117 (5%)
Query: 1 QMHMWGHGSQYRKGPESLRGI-------QPTAMLRLPCYCCAAGCRNNIDHPRAKPLKDF 53
QMHMWGHGSQYRKG ESLRG P +++RLPCYCCA GCRNN++HPRA+PLKDF
Sbjct: 204 QMHMWGHGSQYRKGSESLRGAITVGGAAPPASLMRLPCYCCAEGCRNNVEHPRARPLKDF 263
Query: 54 RTLQTHYKRKHGLKPFLCRKCGKAFAVKGDWRTHEKNCGKLWYCLCGSEFKHKRSLK 110
RTLQTHY+RKHG +P+ CR+CGK FAV+GDWRTHEKNCGKLW+C+CGS+FKHKRSLK
Sbjct: 264 RTLQTHYRRKHGARPYACRRCGKRFAVRGDWRTHEKNCGKLWFCVCGSDFKHKRSLK 320
>Os02g0196100 Similar to T6J4.5 protein (WIP6 protein)
Length = 220
Score = 192 bits (488), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 86/111 (77%), Positives = 98/111 (88%), Gaps = 1/111 (0%)
Query: 1 QMHMWGHGSQYRKG-PESLRGIQPTAMLRLPCYCCAAGCRNNIDHPRAKPLKDFRTLQTH 59
QMHMWGHGSQYR+G +LRG QPTAMLRLPCYCCAAGCRN+IDHPRA+PLKDFRTLQTH
Sbjct: 76 QMHMWGHGSQYRRGGTAALRGAQPTAMLRLPCYCCAAGCRNHIDHPRARPLKDFRTLQTH 135
Query: 60 YKRKHGLKPFLCRKCGKAFAVKGDWRTHEKNCGKLWYCLCGSEFKHKRSLK 110
Y+R+HG + F CR+C K FAV+GDWRTHEKNCG+LW C CG+ F+HKRSL
Sbjct: 136 YRRRHGARDFACRRCAKRFAVRGDWRTHEKNCGRLWRCACGAHFRHKRSLN 186
>Os04g0165200 Zinc finger, C2H2-type domain containing protein
Length = 371
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 62/113 (54%), Gaps = 4/113 (3%)
Query: 1 QMHMWGHGSQYRKGPE-SLRGIQPTAMLRLPCYCC-AAGCRNNIDHPRAKPLKDFRTLQT 58
+MHM HG +Y+ + G A R Y C A GCR N HPR + LK +
Sbjct: 219 RMHMRAHGDEYKTAAALTSTGAGMRAAARRCSYSCPAEGCRWNRRHPRFQALKSVVCAKN 278
Query: 59 HYKRKHGLKPFLCRKC-GKAFAVKGDWRTHEKNCGKL-WYCLCGSEFKHKRSL 109
HY+R H K ++C +C GK FAV D RTHEK+CG+L W C CG+ F K L
Sbjct: 279 HYRRSHCPKMYVCGRCGGKQFAVLSDLRTHEKHCGELRWLCSCGTFFSRKDKL 331
>Os01g0871200 Zinc finger, C2H2-type domain containing protein
Length = 522
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 62/113 (54%), Gaps = 5/113 (4%)
Query: 2 MHMWGHGSQYRKGPESLRGIQPTAMLRLPC--YCCA-AGCRNNIDHPRAKPLKDFRTLQT 58
MHM GHG +Y+ + + +++ P Y C GC+ N +H + +PLK ++
Sbjct: 299 MHMRGHGDEYKTAAALAKPSKDSSLESAPVTRYSCPYVGCKRNKEHKKFQPLKTILCVKN 358
Query: 59 HYKRKHGLKPFLCRKCG-KAFAVKGDWRTHEKNCGKL-WYCLCGSEFKHKRSL 109
HYKR H K + C +C K F+V D +THEK+CG+ W C CG+ F K L
Sbjct: 359 HYKRSHCDKSYTCSRCNTKKFSVIADLKTHEKHCGRDKWLCSCGTTFSRKDKL 411
>Os03g0838800 Zinc finger, C2H2-type domain containing protein
Length = 385
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 61/120 (50%), Gaps = 11/120 (9%)
Query: 1 QMHMWGHGSQYRK--------GPESLRGIQPTAMLRLPCYCCA-AGCRNNIDHPRAKPLK 51
+MHM GHG +Y+ G S A R Y C GC+ N +H +PLK
Sbjct: 180 RMHMRGHGEEYKSAAALAKPGGSPSRSPAAADAAARRRFYSCPYVGCKRNREHKSFQPLK 239
Query: 52 DFRTLQTHYKRKHGLKPFLCRKCG-KAFAVKGDWRTHEKNCGKL-WYCLCGSEFKHKRSL 109
++ HY+R H K F CR+C K F+V D RTHEK+CG+ W C CG+ F K L
Sbjct: 240 TPTCVKNHYRRSHCDKSFTCRRCNVKRFSVVADLRTHEKHCGRDRWVCSCGTSFSRKDKL 299
>Os08g0562300 Zinc finger, C2H2-type domain containing protein
Length = 385
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 59/118 (50%), Gaps = 10/118 (8%)
Query: 2 MHMWGHGSQYRK-----GPESL--RGIQPTAMLRLPCYCC-AAGCRNNIDHPRAKPLKDF 53
MHM HG +Y+ P L +G T Y C GCR N H + +PLK
Sbjct: 221 MHMRAHGDEYKSKAALSNPTKLLAKGGDETMAAAARKYSCPQEGCRWNRRHAKFQPLKSV 280
Query: 54 RTLQTHYKRKHGLKPFLCRKCG-KAFAVKGDWRTHEKNCGK-LWYCLCGSEFKHKRSL 109
+ HYKR H K ++C +CG K F+V D RTHEK+CG W C CG+ F K L
Sbjct: 281 ICAKNHYKRSHCPKMYVCNRCGRKHFSVLSDLRTHEKHCGDHRWLCSCGTSFSRKDKL 338
>Os12g0170400 Zinc finger, C2H2-type domain containing protein
Length = 465
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 60/117 (51%), Gaps = 8/117 (6%)
Query: 1 QMHMWGHGSQYRKGPESLRGIQPTAMLRLPC-----YCCA-AGCRNNIDHPRAKPLKDFR 54
+MHM GHG +Y+ + P P Y C AGC+ N H +PLK
Sbjct: 245 RMHMRGHGDEYKSAAALAKPPPPPEGEEQPPQPERRYSCPHAGCKRNRMHASFQPLKTIL 304
Query: 55 TLQTHYKRKHGLKPFLCRKCG-KAFAVKGDWRTHEKNCGK-LWYCLCGSEFKHKRSL 109
++ HYKR H K +C +CG K F+V D +THEK+CG+ W C CG+ F K L
Sbjct: 305 CVKNHYKRSHCEKRHVCGRCGAKRFSVMADLKTHEKHCGRDRWLCSCGTSFSRKDKL 361
>Os01g0195000 Zinc finger, C2H2-type domain containing protein
Length = 487
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 10/111 (9%)
Query: 1 QMHMWGHGSQYRKGPESLRGIQPTAMLRLPCYCC-AAGCRNNIDHPRAKPLKDFRTLQTH 59
Q+H GH ++ L+ P ++R Y C AGC + H A+ L D ++ H
Sbjct: 90 QLHRRGHNLPWK-----LKQRNPKEVVRKKVYVCPEAGC---VHHDPARALGDLTGIKKH 141
Query: 60 YKRKHGLKPFLCRKCGKAFAVKGDWRTHEKNCGKLWY-CLCGSEFKHKRSL 109
+ RKHG K + C KC K +AV DW+ H K CG Y C CG+ F + S
Sbjct: 142 FSRKHGEKKWKCDKCSKRYAVHSDWKAHSKVCGTREYRCDCGTLFSRRDSF 192
>Os02g0572900 Zinc finger, C2H2-type domain containing protein
Length = 384
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 1 QMHMWGHGSQYRKGPESLRGIQPT--AMLRLPCYCCAAGCRNNIDHPRAKPLKDFRTLQT 58
+MHM HG +++ R QP A + C AGC N H R +PLK +
Sbjct: 189 RMHMRAHGDRFKTLDALSRPGQPKPPAGREVRFSCPYAGCNRNRAHRRFRPLKSAVCARN 248
Query: 59 HYKRKHGLKPFLCRKCG--KAFAVKGDWRTHEKNCGK--LWYCLCGSEFKHKRSL 109
H++R H K + C +CG K FAV D R+H ++CG+ W C CG+ F K L
Sbjct: 249 HFRRSHCPKLYACERCGGKKRFAVLADLRSHLRHCGEEAQWRCSCGTTFSRKDKL 303
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.137 0.477
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,646,368
Number of extensions: 166296
Number of successful extensions: 488
Number of sequences better than 1.0e-10: 25
Number of HSP's gapped: 471
Number of HSP's successfully gapped: 25
Length of query: 154
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 62
Effective length of database: 12,232,113
Effective search space: 758391006
Effective search space used: 758391006
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 151 (62.8 bits)