Os12g0170400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, C2H2-type domain containing protein.
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Os12g0170400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, C2H2-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.17 | 0.286 | 12.4 | 2.22 | 0.265 | -0.79 | 0.169 | 0.4 | 0.785 | 21.4 | 20.79 | 19 | -- | -- |
| 37.25 | 0.286 | 12.4 | 2.14 | 0.258 | -0.741 | 0.0477 | -- | 0.758 | 21.8 | 20.8 | 18 | -- | -- |
| 37.2 | 0.286 | 12.4 | 2.18 | 0.256 | -0.751 | -- | 0.245 | 0.769 | 21.9 | 20.8 | 18 | -- | -- |
| 37.26 | 0.286 | 12.4 | 2.14 | 0.258 | -0.733 | -- | -- | 0.756 | 21.9 | 20.8 | 18 | -- | -- |
| 40.83 | 0.299 | 12.4 | 2.22 | -- | -0.867 | -- | 0.341 | 0.792 | -- | 20.65 | 15 | -- | -- |
| 45.47 | 0.316 | 12.5 | 1.98 | 0.444 | -- | -0.127 | -- | 0.631 | 0.312 | -- | -- | -- | -- |
| 45.54 | 0.316 | 12.5 | 1.99 | 0.444 | -- | -- | -- | 0.632 | 0.245 | -- | -- | -- | -- |
| 40.91 | 0.298 | 12.4 | 2.18 | -- | -0.853 | -- | -- | 0.78 | -- | 20.43 | 3 | -- | -- |
| 91.17 | 0.445 | 12.5 | -- | 0.602 | 1 | -- | -- | 0.265 | 23.9 | 35.04 | 47520 | -- | -- |
| 57.96 | 0.356 | 12.4 | 2 | -- | -- | -- | -- | 0.639 | -- | -- | -- | -- | -- |
| 149.71 | 0.572 | 12.5 | -- | 0.473 | -- | -- | -- | 0.411 | 0.47 | -- | -- | -- | -- |
| 97.73 | 0.46 | 12.5 | -- | -- | 1.04 | -- | -- | 0.574 | -- | 35.39 | 47520 | -- | -- |
| 163.76 | 0.597 | 12.5 | -- | -- | -- | -- | -- | 0.417 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.48 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 22 |
| 3 | 36.51 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 5 | 36.56 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 7 | 36.57 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 2 |
| 11 | 36.67 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 17 |
| 12 | 36.70 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 6 |
| 13 | 36.70 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 17 |
| 14 | 36.71 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 8 |
| 33 | 36.75 | temperature | 30 | 1440 | < th | dose independent | rect. | 1 | 10 |
| 34 | 36.75 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 13 |
| 45 | 36.94 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 47 | 36.94 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 48 | 36.94 | temperature | 30 | 14400 | > th | dose dependent | rect. | 18 | 16 |
| 62 | 36.97 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 92 | 37.01 | temperature | 30 | 1440 | > th | dose dependent | rect. | 18 | 19 |
| 96 | 37.02 | temperature | 30 | 1440 | > th | dose dependent | rect. | 9 | 4 |
| 112 | 37.04 | temperature | 30 | 1440 | > th | dose dependent | sin | 8 | NA |
| 113 | 37.04 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 2 |
| 183 | 37.10 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 233 | 37.13 | temperature | 30 | 1440 | > th | dose independent | sin | 9 | NA |
| 306 | 37.21 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 308 | 37.22 | temperature | 30 | 1440 | < th | dose independent | sin | 9 | NA |
| 320 | 37.25 | temperature | 10 | 10 | > th | dose dependent | sin | 22 | NA |
| 327 | 37.26 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 503 | 37.39 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 542 | 37.43 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 651 | 37.44 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 668 | 37.45 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 742 | 37.51 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 784 | 37.54 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 791 | 37.56 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 797 | 37.57 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 10 |
| 811 | 37.59 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 831 | 37.62 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 867 | 37.65 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 897 | 37.69 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 5 |