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Os02g0572900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, C2H2-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.58 (0.0211) R2 : 0.683
β1 : 2.29 (0.0774) R2dD : 0.631 R2D : 0.663
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.205 (0.0451) R2dN8 : 0.0192 R2N8 : 0.0518
σ : 0.397
deviance : 72.13
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
59.69 0.363 7.52 2.7 0.0252 -0.438 -1.23 1.51 -0.0255 23.8 26.5 752 -- --
61.42 0.365 7.56 2.35 0.0318 -0.36 -1.03 -- -0.13 0.729 26.6 703 -- --
65.42 0.377 7.53 2.72 0.0114 -0.508 -- 1.59 -0.0653 23.1 27.5 806 -- --
65.78 0.378 7.55 2.39 0.108 -0.396 -- -- -0.127 4.66 26.61 837 -- --
65.35 0.376 7.53 2.66 -- -0.478 -- 1.32 -0.0824 -- 27.52 797 -- --
66.22 0.382 7.57 2.25 0.163 -- 1.04 -- -0.207 10.3 -- -- -- --
68.61 0.388 7.57 2.28 0.258 -- -- -- -0.21 7.13 -- -- -- --
66.24 0.379 7.56 2.4 -- -0.38 -- -- -0.141 -- 27 743 -- --
196.51 0.656 7.65 -- 0.499 0.387 -- -- -0.571 4.61 26.61 837 -- --
72.13 0.397 7.58 2.29 -- -- -- -- -0.205 -- -- -- -- --
206.11 0.672 7.63 -- 0.285 -- -- -- -0.464 6.61 -- -- -- --
102.17 0.471 7.73 -- -- 1.6 -- -- -0.89 -- 19.36 47520 -- --
210.34 0.677 7.63 -- -- -- -- -- -0.459 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 53.77 temperature 25.0 720 > th dose independent rect. 17 1
2 53.77 temperature 25.0 720 > th dose independent rect. 16 3
4 54.46 temperature 20.0 720 > th dose dependent rect. 17 1
6 54.72 temperature 20.0 720 > th dose dependent rect. 16 3
7 54.79 temperature 10.0 720 > th dose dependent rect. 16 3
8 54.84 radiation 1.0 720 > th dose independent rect. 17 1
11 54.94 radiation 1.0 720 > th dose independent rect. 16 13
13 54.97 radiation 1.0 720 > th dose independent rect. 16 3
41 55.40 radiation 1.0 720 < th dose dependent rect. 15 9
52 55.57 temperature 10.0 720 > th dose dependent rect. 4 3
53 55.58 temperature 25.0 720 < th dose independent rect. 18 1
58 55.69 temperature 10.0 270 > th dose dependent rect. 17 10
59 55.70 temperature 25.0 270 < th dose independent rect. 15 15
64 55.78 temperature 20.0 90 > th dose dependent rect. 17 12
73 56.00 radiation 1.0 720 < th dose independent rect. 16 8
80 56.08 temperature 30.0 90 < th dose dependent rect. 15 16
98 56.20 radiation 1.0 720 < th dose dependent rect. 7 17
135 56.57 precipitation 0.1 720 < th dose independent rect. 7 21
138 56.57 precipitation 0.1 720 < th dose dependent rect. 7 21
141 56.59 wind 5.0 90 < th dose independent rect. 17 12
145 56.62 precipitation 0.1 720 < th dose independent rect. 16 3
148 56.62 precipitation 0.1 720 < th dose dependent rect. 16 3
180 56.88 temperature 20.0 720 > th dose independent rect. 5 1
181 56.88 precipitation 0.1 720 < th dose independent rect. 1 18
182 56.88 precipitation 0.1 720 < th dose dependent rect. 1 18
216 57.05 atmosphere 1015.0 90 < th dose independent rect. 7 22
226 57.10 wind 9.0 90 < th dose dependent rect. 17 12
260 57.24 precipitation 0.1 90 < th dose independent rect. 7 22
262 57.24 precipitation 0.1 90 < th dose dependent rect. 7 22
271 57.30 temperature 20.0 90 > th dose independent rect. 5 2
274 57.31 atmosphere 995.0 90 > th dose independent rect. 7 22
279 57.32 humidity 80.0 90 > th dose independent rect. 5 2
283 57.33 radiation 1.0 720 < th dose independent rect. 7 17
297 57.38 wind 1.0 10 > th dose independent rect. 19 13
303 57.39 humidity 50.0 90 > th dose dependent rect. 5 2
311 57.42 radiation 20.0 90 < th dose independent rect. 5 2
321 57.46 temperature 25.0 720 < th dose independent sin 17 NA
326 57.49 wind 7.0 720 < th dose independent rect. 17 1
327 57.49 wind 9.0 4320 < th dose independent rect. 6 2
332 57.50 radiation 40.0 90 < th dose dependent rect. 5 2
335 57.51 wind 7.0 90 < th dose independent rect. 5 2
337 57.51 temperature 10.0 90 > th dose independent rect. 5 2
339 57.51 temperature 30.0 90 < th dose independent rect. 5 2
340 57.51 humidity 50.0 90 > th dose independent rect. 5 2
342 57.51 atmosphere 995.0 90 > th dose independent rect. 5 2
343 57.51 atmosphere 1010.0 90 < th dose independent rect. 5 2
346 57.51 temperature 10.0 90 > th dose independent rect. 7 22
347 57.51 temperature 30.0 720 < th dose dependent rect. 19 1
348 57.51 atmosphere 1015.0 90 < th dose dependent rect. 5 2
353 57.53 precipitation 0.1 90 < th dose independent rect. 5 2
358 57.53 precipitation 0.1 90 < th dose dependent rect. 5 2
378 57.59 temperature 10.0 90 > th dose dependent rect. 5 2
379 57.59 temperature 10.0 90 > th dose dependent rect. 5 12
381 57.60 humidity 90.0 720 < th dose independent rect. 17 1
392 57.63 wind 7.0 720 < th dose independent rect. 16 3
405 57.65 wind 7.0 90 < th dose independent rect. 5 12
406 57.65 radiation 40.0 90 < th dose dependent rect. 9 20
414 57.69 humidity 50.0 4320 > th dose independent rect. 6 4
419 57.70 wind 9.0 90 < th dose dependent rect. 5 2
425 57.72 temperature 20.0 90 > th dose independent rect. 17 12
439 57.76 wind 7.0 270 < th dose independent rect. 3 12
440 57.77 wind 1.0 10 > th dose independent rect. 15 17
443 57.78 radiation 40.0 270 < th dose independent rect. 7 20
458 57.81 temperature 10.0 1440 > th dose independent rect. 6 4
461 57.81 atmosphere 995.0 1440 > th dose independent rect. 6 4
462 57.81 atmosphere 1015.0 1440 < th dose independent rect. 6 4
464 57.81 temperature 10.0 1440 > th dose independent rect. 10 20
487 57.87 humidity 60.0 90 > th dose dependent rect. 5 4
497 57.89 wind 1.0 90 > th dose independent rect. 5 2
501 57.90 radiation 1.0 720 < th dose dependent sin 18 NA
550 58.02 wind 1.0 720 > th dose independent rect. 17 2
570 58.06 temperature 25.0 720 > th dose dependent sin 16 NA
580 58.08 radiation 40.0 720 < th dose independent rect. 15 4
591 58.10 wind 9.0 30 < th dose dependent rect. 5 12
622 58.19 temperature 10.0 1440 > th dose independent rect. 6 2
625 58.19 temperature 30.0 1440 < th dose independent rect. 6 2
629 58.19 humidity 50.0 1440 > th dose independent rect. 6 2
634 58.19 atmosphere 995.0 1440 > th dose independent rect. 6 2
635 58.19 atmosphere 1015.0 1440 < th dose independent rect. 6 2
642 58.19 humidity 90.0 720 < th dose independent rect. 16 3
655 58.19 temperature 20.0 270 > th dose dependent rect. 20 7
659 58.20 temperature 30.0 30 < th dose independent rect. 9 20
664 58.21 temperature 15.0 90 > th dose dependent rect. 20 9
674 58.23 temperature 15.0 90 > th dose independent rect. 5 12
688 58.25 radiation 20.0 90 < th dose independent rect. 9 20
693 58.26 humidity 80.0 270 > th dose independent rect. 3 4
694 58.26 radiation 10.0 270 < th dose independent rect. 3 4
711 58.29 humidity 70.0 720 > th dose independent rect. 19 5
714 58.29 precipitation 0.1 90 < th dose independent rect. 17 12
717 58.29 precipitation 0.1 90 < th dose dependent rect. 17 12
781 58.39 humidity 50.0 720 > th dose dependent rect. 19 5
801 58.41 atmosphere 995.0 90 > th dose dependent rect. 5 2
806 58.42 wind 1.0 10 > th dose independent rect. 5 4
808 58.42 humidity 50.0 270 > th dose independent rect. 3 14
813 58.43 temperature 20.0 90 > th dose independent rect. 9 20
814 58.43 humidity 50.0 30 > th dose independent rect. 9 20
815 58.43 humidity 50.0 90 > th dose independent rect. 7 22
869 58.49 temperature 15.0 720 > th dose independent rect. 19 22
880 58.51 atmosphere 1015.0 90 < th dose independent rect. 17 12
902 58.53 humidity 60.0 270 > th dose dependent rect. 3 4
905 58.54 radiation 10.0 720 < th dose independent rect. 17 1
910 58.54 wind 9.0 90 < th dose independent rect. 7 22
911 58.54 temperature 30.0 720 < th dose dependent rect. 17 4
919 58.55 radiation 1.0 720 > th dose independent sin 15 NA
922 58.55 precipitation 0.1 720 < th dose independent rect. 15 14
931 58.55 precipitation 0.1 720 < th dose dependent rect. 15 14
952 58.57 atmosphere 1015.0 720 < th dose independent rect. 3 4
959 58.57 wind 9.0 720 < th dose dependent rect. 17 1
986 58.60 wind 1.0 10 > th dose independent sin 13 NA
990 58.60 temperature 20.0 270 > th dose dependent rect. 22 4
996 58.61 temperature 10.0 90 > th dose independent rect. 17 12
997 58.61 atmosphere 995.0 90 > th dose independent rect. 17 12
998 58.61 atmosphere 1015.0 90 < th dose independent rect. 5 12
999 58.61 radiation 20.0 90 < th dose independent rect. 17 12