Os06g0612300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to T6J4.5 protein (WIP6 protein).
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Os06g0612300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to T6J4.5 protein (WIP6 protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.82 | 0.354 | 7.92 | 0.969 | 0.442 | 0.32 | -0.206 | 0.666 | 0.588 | 1.27 | 19.64 | 1483 | -- | -- |
| 57.87 | 0.354 | 7.92 | 1.01 | 0.441 | 0.352 | -0.197 | -- | 0.602 | 1.26 | 19.58 | 1499 | -- | -- |
| 56.99 | 0.352 | 7.92 | 0.968 | 0.443 | 0.321 | -- | 0.68 | 0.589 | 1.19 | 19.64 | 1481 | -- | -- |
| 57.83 | 0.354 | 7.92 | 1.02 | 0.414 | 0.344 | -- | -- | 0.598 | 0.957 | 19.54 | 1627 | -- | -- |
| 65.71 | 0.38 | 7.93 | 1 | -- | 0.303 | -- | -0.395 | 0.534 | -- | 19.64 | 1481 | -- | -- |
| 62.19 | 0.37 | 7.93 | 0.999 | 0.426 | -- | -0.27 | -- | 0.535 | 1.27 | -- | -- | -- | -- |
| 62.48 | 0.37 | 7.93 | 1.01 | 0.426 | -- | -- | -- | 0.536 | 1.15 | -- | -- | -- | -- |
| 65.55 | 0.377 | 7.91 | 1.03 | -- | 0.518 | -- | -- | 0.621 | -- | 17.33 | 1753 | -- | -- |
| 82.71 | 0.424 | 7.91 | -- | 0.424 | 0.371 | -- | -- | 0.588 | 0.625 | 19.89 | 9952 | -- | -- |
| 73.73 | 0.401 | 7.92 | 1.03 | -- | -- | -- | -- | 0.545 | -- | -- | -- | -- | -- |
| 89.31 | 0.442 | 7.96 | -- | 0.443 | -- | -- | -- | 0.424 | 1.24 | -- | -- | -- | -- |
| 87.72 | 0.436 | 7.91 | -- | -- | 0.654 | -- | -- | 0.583 | -- | 20 | 29164 | -- | -- |
| 101.46 | 0.47 | 7.95 | -- | -- | -- | -- | -- | 0.431 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 54.82 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 2 | 55.32 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 3 | 55.43 | radiation | 20 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 4 | 55.45 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 7 | 55.76 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 8 | 55.81 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 10 | 55.91 | temperature | 30 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 11 | 55.92 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 5 |
| 12 | 55.93 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 13 | 55.94 | radiation | 20 | 4320 | < th | dose dependent | rect. | 7 | 2 |
| 14 | 55.96 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 17 | 55.97 | radiation | 1 | 14400 | < th | dose dependent | rect. | 19 | 2 |
| 23 | 56.09 | radiation | 10 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 24 | 56.09 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 20 | 11 |
| 25 | 56.10 | humidity | 50 | 90 | > th | dose dependent | rect. | 18 | 1 |
| 27 | 56.13 | radiation | 10 | 14400 | < th | dose dependent | rect. | 19 | 6 |
| 33 | 56.19 | humidity | 60 | 90 | > th | dose independent | rect. | 18 | 1 |
| 38 | 56.22 | radiation | 10 | 1440 | < th | dose independent | rect. | 7 | 4 |
| 45 | 56.26 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 5 |
| 49 | 56.28 | temperature | 30 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 67 | 56.37 | radiation | 1 | 90 | < th | dose independent | rect. | 18 | 1 |
| 74 | 56.39 | radiation | 10 | 1440 | > th | dose independent | rect. | 7 | 4 |
| 82 | 56.40 | radiation | 10 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 90 | 56.42 | temperature | 30 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 116 | 56.46 | humidity | 70 | 10 | < th | dose independent | rect. | 11 | 8 |
| 145 | 56.47 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 190 | 56.49 | temperature | 30 | 14400 | < th | dose independent | rect. | 11 | 10 |
| 278 | 56.50 | radiation | 1 | 90 | < th | dose dependent | rect. | 18 | 1 |
| 280 | 56.50 | radiation | 20 | 1440 | < th | dose dependent | rect. | 19 | 16 |
| 304 | 56.52 | radiation | 20 | 1440 | < th | dose dependent | rect. | 23 | 12 |
| 306 | 56.53 | temperature | 30 | 14400 | > th | dose independent | sin | 0 | NA |
| 309 | 56.53 | temperature | 30 | 14400 | < th | dose independent | sin | 1 | NA |
| 350 | 56.54 | temperature | 30 | 14400 | > th | dose independent | sin | 22 | NA |
| 430 | 56.57 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 506 | 56.60 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 610 | 56.61 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 640 | 56.61 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 19 |
| 696 | 56.62 | radiation | 20 | 1440 | > th | dose independent | rect. | 6 | 6 |
| 761 | 56.63 | radiation | 20 | 1440 | < th | dose independent | rect. | 19 | 17 |
| 801 | 56.64 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 6 |
| 804 | 56.64 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 818 | 56.65 | radiation | 20 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 822 | 56.65 | radiation | 20 | 1440 | < th | dose independent | rect. | 24 | 12 |
| 843 | 56.66 | radiation | 20 | 1440 | < th | dose independent | rect. | 19 | 20 |
| 846 | 56.66 | temperature | 30 | 14400 | > th | dose dependent | sin | 0 | NA |
| 853 | 56.66 | humidity | 70 | 1440 | > th | dose dependent | rect. | 24 | 15 |
| 859 | 56.67 | radiation | 20 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 860 | 56.67 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 870 | 56.67 | radiation | 20 | 1440 | < th | dose independent | rect. | 24 | 15 |
| 921 | 56.68 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 929 | 56.68 | atmosphere | 1015 | 90 | < th | dose independent | rect. | 19 | 23 |
| 930 | 56.68 | temperature | 30 | 14400 | > th | dose dependent | sin | 21 | NA |
| 958 | 56.69 | temperature | 30 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 959 | 56.69 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 964 | 56.69 | radiation | 20 | 1440 | < th | dose dependent | sin | 8 | NA |