Os01g0195000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, C2H2-type domain containing protein.
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Os01g0195000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, C2H2-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.46 | 0.313 | 8.79 | 0.492 | 0.41 | -1.45 | -0.205 | 0.535 | 0.33 | 2.48 | 20.7 | 245 | -- | -- |
| 44.73 | 0.311 | 8.8 | 0.475 | 0.383 | -1.48 | -0.208 | -- | 0.323 | 2.38 | 20.78 | 222 | -- | -- |
| 44.35 | 0.31 | 8.79 | 0.527 | 0.381 | -1.47 | -- | 0.704 | 0.327 | 2.48 | 21 | 217 | -- | -- |
| 44.79 | 0.312 | 8.8 | 0.42 | 0.395 | -1.41 | -- | -- | 0.307 | 2.77 | 20.97 | 209 | -- | -- |
| 49.23 | 0.327 | 8.77 | 0.665 | -- | -1.81 | -- | 1.09 | 0.409 | -- | 21.24 | 149 | -- | -- |
| 78.87 | 0.416 | 8.85 | 0.0772 | 0.935 | -- | -0.0194 | -- | 0.0605 | 3.68 | -- | -- | -- | -- |
| 78.87 | 0.416 | 8.85 | 0.0775 | 0.935 | -- | -- | -- | 0.0606 | 3.68 | -- | -- | -- | -- |
| 50.08 | 0.33 | 8.79 | 0.473 | -- | -1.75 | -- | -- | 0.358 | -- | 21.09 | 149 | -- | -- |
| 48.49 | 0.324 | 8.81 | -- | 0.447 | -1.28 | -- | -- | 0.241 | 3.05 | 21 | 194 | -- | -- |
| 127.37 | 0.527 | 8.85 | 0.117 | -- | -- | -- | -- | 0.0855 | -- | -- | -- | -- | -- |
| 79.03 | 0.416 | 8.85 | -- | 0.937 | -- | -- | -- | 0.0519 | 3.68 | -- | -- | -- | -- |
| 55.7 | 0.348 | 8.81 | -- | -- | -1.65 | -- | -- | 0.291 | -- | 21.3 | 149 | -- | -- |
| 127.73 | 0.528 | 8.85 | -- | -- | -- | -- | -- | 0.0725 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.66 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 22 |
| 26 | 44.91 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 28 | 45.00 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 31 | 45.16 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 36 | 45.49 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 39 | 45.61 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 58 | 46.18 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 93 | 46.89 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 115 | 47.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 140 | 47.47 | temperature | 10 | 270 | > th | dose dependent | sin | 1 | NA |
| 144 | 47.49 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 147 | 47.51 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 154 | 47.57 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 201 | 47.94 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 274 | 48.47 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 306 | 48.71 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 332 | 48.87 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 334 | 48.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 340 | 48.94 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 344 | 48.96 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 19 |
| 367 | 49.05 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 21 |
| 382 | 49.11 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 11 |
| 425 | 49.22 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 9 |
| 433 | 49.24 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 13 |
| 452 | 49.26 | radiation | 1 | 14400 | < th | dose dependent | sin | 21 | NA |
| 454 | 49.26 | radiation | 1 | 14400 | < th | dose dependent | rect. | 11 | 11 |
| 460 | 49.27 | radiation | 1 | 14400 | < th | dose dependent | rect. | 11 | 8 |
| 477 | 49.28 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 15 |
| 488 | 49.29 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 13 |
| 501 | 49.30 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 11 |
| 521 | 49.31 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 523 | 49.31 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 2 |
| 538 | 49.32 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 544 | 49.33 | radiation | 1 | 14400 | > th | dose independent | sin | 20 | NA |
| 578 | 49.34 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 13 |
| 594 | 49.35 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 18 |
| 595 | 49.35 | radiation | 1 | 14400 | < th | dose dependent | rect. | 9 | 22 |
| 602 | 49.36 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 15 |
| 669 | 49.44 | radiation | 1 | 14400 | < th | dose independent | sin | 21 | NA |
| 754 | 49.48 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 21 |
| 790 | 49.50 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 805 | 49.50 | radiation | 1 | 14400 | < th | dose dependent | rect. | 11 | 23 |
| 828 | 49.51 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 23 |
| 845 | 49.53 | radiation | 1 | 14400 | > th | dose independent | rect. | 6 | 13 |
| 856 | 49.53 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 885 | 49.55 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 23 |
| 898 | 49.56 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 16 |
| 915 | 49.57 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 14 |