Os08g0562300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, C2H2-type domain containing protein.
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Os08g0562300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, C2H2-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 442.74 | 0.989 | 4.2 | 3.62 | 0.119 | 3.29 | 1.53 | 3.42 | 0.599 | 18.5 | 3.661 | 4459 | -- | -- |
| 456.54 | 0.995 | 4.2 | 4.28 | 0.105 | 3.14 | 1.6 | -- | 0.677 | 20 | 3.67 | 4451 | -- | -- |
| 448.17 | 0.986 | 4.2 | 3.62 | 0.112 | 3.33 | -- | 3.48 | 0.601 | 17.4 | 3.5 | 4452 | -- | -- |
| 464.49 | 1 | 4.19 | 4.32 | 0.118 | 3.23 | -- | -- | 0.751 | 18.6 | 3.664 | 4452 | -- | -- |
| 448.61 | 0.986 | 4.19 | 3.59 | -- | 3.32 | -- | 3.58 | 0.61 | -- | 3.474 | 4443 | -- | -- |
| 644.11 | 1.19 | 4.31 | 3.74 | 0.543 | -- | 0.962 | -- | 0.0444 | 23.2 | -- | -- | -- | -- |
| 647.46 | 1.19 | 4.31 | 3.69 | 0.546 | -- | -- | -- | 0.0382 | 23.9 | -- | -- | -- | -- |
| 464.08 | 1 | 4.14 | 4.29 | -- | 3.23 | -- | -- | 0.766 | -- | 3.67 | 4443 | -- | -- |
| 808.42 | 1.32 | 4.17 | -- | 0.189 | 3.2 | -- | -- | 0.678 | 18.3 | 9.997 | 8886 | -- | -- |
| 666.2 | 1.21 | 4.3 | 3.71 | -- | -- | -- | -- | 0.0456 | -- | -- | -- | -- | -- |
| 1007.18 | 1.48 | 4.4 | -- | 0.595 | -- | -- | -- | -0.373 | 0.305 | -- | -- | -- | -- |
| 809 | 1.32 | 4.17 | -- | -- | 3.19 | -- | -- | 0.615 | -- | 10 | 8873 | -- | -- |
| 1029.49 | 1.5 | 4.39 | -- | -- | -- | -- | -- | -0.366 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 417.45 | humidity | 80 | 43200 | < th | dose independent | rect. | 8 | 13 |
| 2 | 417.98 | humidity | 80 | 43200 | > th | dose independent | rect. | 8 | 13 |
| 3 | 417.98 | humidity | 70 | 43200 | > th | dose dependent | rect. | 14 | 6 |
| 7 | 418.53 | humidity | 70 | 43200 | > th | dose dependent | rect. | 9 | 12 |
| 13 | 418.96 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 8 |
| 32 | 420.05 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 36 | 420.23 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 11 |
| 58 | 421.24 | humidity | 80 | 43200 | < th | dose independent | rect. | 11 | 10 |
| 72 | 421.98 | humidity | 80 | 43200 | > th | dose independent | sin | 22 | NA |
| 79 | 422.46 | humidity | 70 | 43200 | > th | dose dependent | sin | 22 | NA |
| 81 | 422.50 | humidity | 80 | 43200 | < th | dose independent | sin | 22 | NA |
| 89 | 422.74 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 166 | 425.56 | humidity | 80 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 183 | 426.08 | humidity | 70 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 250 | 427.86 | humidity | 80 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 283 | 428.64 | humidity | 70 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 343 | 430.13 | humidity | 80 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 360 | 430.49 | radiation | 1 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 361 | 430.51 | radiation | 1 | 43200 | < th | dose independent | rect. | 2 | 4 |
| 375 | 430.63 | radiation | 1 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 383 | 430.78 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 431 | 431.19 | temperature | 10 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 503 | 432.32 | humidity | 80 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 554 | 432.90 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 601 | 433.39 | temperature | 30 | 43200 | < th | dose dependent | rect. | 16 | 3 |
| 610 | 433.48 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 617 | 433.52 | radiation | 1 | 43200 | < th | dose independent | rect. | 11 | 7 |
| 656 | 433.78 | temperature | 10 | 43200 | > th | dose dependent | rect. | 8 | 11 |
| 667 | 433.84 | radiation | 1 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 724 | 434.21 | radiation | 1 | 43200 | > th | dose independent | rect. | 11 | 7 |
| 733 | 434.27 | temperature | 10 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 738 | 434.28 | temperature | 30 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 759 | 434.36 | temperature | 10 | 43200 | > th | dose dependent | sin | 22 | NA |
| 834 | 434.72 | radiation | 1 | 43200 | > th | dose independent | rect. | 11 | 19 |
| 908 | 434.95 | radiation | 1 | 43200 | < th | dose independent | rect. | 11 | 20 |
| 924 | 435.03 | temperature | 30 | 43200 | < th | dose dependent | rect. | 6 | 14 |