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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0838800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, C2H2-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.89 (0.02) R2 : 0.000779
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.025 (0.042) R2dN8 : 0.00101 R2N8 : 0.000779
σ : 0.376
deviance : 64.81
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
60.21 0.365 2.87 0.229 0.0108 0.474 -0.601 -2.89 -0.0198 7.94 51.73 492 -- --
60.36 0.362 2.86 0.103 0.0497 -0.816 -0.564 -- 0.0514 7.14 43.08 405 -- --
60.96 0.364 2.86 0.213 0.0794 0.365 -- -2.93 -0.0218 4.2 52 496 -- --
60.65 0.363 2.88 0.0718 0.102 -0.958 -- -- 0.00157 6.49 43 415 -- --
61.24 0.364 2.86 0.211 -- 0.451 -- -3.05 -0.017 -- 51.5 496 -- --
62.73 0.371 2.89 0.157 0.0313 -- -0.746 -- -0.0113 7.33 -- -- -- --
64.1 0.375 2.89 0.139 0.0581 -- -- -- -0.0109 3.66 -- -- -- --
60.84 0.363 2.88 0.0755 -- -0.997 -- -- -0.00153 -- 43 415 -- --
60.52 0.362 2.89 -- 0.0935 -1.08 -- -- -0.0127 4.19 43.02 415 -- --
64.28 0.375 2.89 0.141 -- -- -- -- -0.00936 -- -- -- -- --
64.6 0.376 2.89 -- 0.0608 -- -- -- -0.0264 3.64 -- -- -- --
60.98 0.364 2.89 -- -- -1.03 -- -- -0.0113 -- 43.01 414 -- --
64.81 0.376 2.89 -- -- -- -- -- -0.025 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 57.01 wind 3.0 90 < th dose dependent rect. 19 1
3 57.36 wind 1.0 270 < th dose independent rect. 16 1
4 57.36 wind 1.0 270 < th dose dependent rect. 16 1
8 57.84 wind 3.0 90 < th dose independent rect. 18 2
13 58.10 temperature 20.0 90 < th dose dependent rect. 2 1
14 58.17 humidity 70.0 270 < th dose independent rect. 17 1
15 58.17 humidity 70.0 270 < th dose dependent rect. 17 1
16 58.17 wind 3.0 10 < th dose dependent rect. 18 2
33 58.73 temperature 30.0 90 > th dose dependent rect. 10 1
45 59.12 temperature 30.0 90 > th dose dependent rect. 8 4
81 59.51 temperature 30.0 10 > th dose dependent rect. 10 2
102 59.59 temperature 20.0 90 < th dose independent rect. 2 1
182 59.96 wind 3.0 90 > th dose independent rect. 12 10
209 60.04 temperature 30.0 90 > th dose independent rect. 10 1
220 60.15 temperature 25.0 30 > th dose independent rect. 8 1
222 60.16 temperature 10.0 1440 > th dose independent rect. 9 1
225 60.16 atmosphere 995.0 1440 > th dose independent rect. 9 1
228 60.16 atmosphere 1015.0 1440 < th dose independent rect. 9 1
232 60.16 temperature 10.0 1440 > th dose independent rect. 10 23
239 60.18 humidity 80.0 30 < th dose independent rect. 8 1
243 60.19 atmosphere 1005.0 30 > th dose dependent rect. 8 1
245 60.21 atmosphere 1005.0 30 > th dose independent rect. 8 1
246 60.21 radiation 10.0 30 > th dose independent rect. 8 1
265 60.23 wind 5.0 10 > th dose independent rect. 24 2
271 60.23 wind 5.0 10 > th dose dependent rect. 24 2
277 60.24 temperature 30.0 90 > th dose dependent sin 8 NA
278 60.24 wind 1.0 30 > th dose dependent rect. 8 1
285 60.25 humidity 90.0 30 < th dose dependent rect. 8 1
288 60.26 wind 3.0 30 > th dose independent rect. 8 1
289 60.26 humidity 70.0 30 > th dose independent rect. 8 1
290 60.26 atmosphere 1005.0 90 < th dose independent rect. 2 1
291 60.26 atmosphere 1005.0 10 < th dose independent rect. 3 1
296 60.26 radiation 40.0 30 < th dose independent rect. 8 1
307 60.28 wind 5.0 30 < th dose independent rect. 8 1
311 60.29 temperature 10.0 30 > th dose independent rect. 8 1
314 60.29 temperature 30.0 30 < th dose independent rect. 8 1
315 60.29 humidity 50.0 30 > th dose independent rect. 8 1
318 60.29 atmosphere 1010.0 30 < th dose independent rect. 8 1
321 60.29 precipitation 0.1 30 < th dose independent rect. 8 1
323 60.29 temperature 10.0 30 > th dose independent rect. 9 23
324 60.29 radiation 1.0 30 > th dose dependent rect. 8 1
325 60.29 precipitation 0.1 30 < th dose dependent rect. 8 1
329 60.31 wind 9.0 30 < th dose dependent rect. 8 1
331 60.32 temperature 20.0 720 < th dose independent rect. 16 1
333 60.32 temperature 30.0 10 > th dose dependent sin 7 NA
338 60.33 wind 5.0 90 > th dose independent rect. 22 2
342 60.33 temperature 20.0 720 < th dose dependent rect. 16 1
343 60.33 radiation 40.0 30 < th dose dependent rect. 8 1
345 60.33 wind 1.0 10 > th dose dependent rect. 12 11
353 60.36 humidity 50.0 30 > th dose dependent rect. 8 1
354 60.37 humidity 80.0 720 < th dose independent rect. 24 1
356 60.37 humidity 80.0 720 < th dose dependent rect. 24 1
358 60.37 wind 1.0 90 > th dose dependent rect. 12 10
359 60.38 humidity 80.0 90 < th dose independent rect. 24 1
361 60.38 humidity 80.0 10 < th dose independent rect. 24 2
371 60.38 humidity 90.0 90 > th dose dependent rect. 2 1
373 60.38 humidity 80.0 90 < th dose dependent rect. 24 1
375 60.38 humidity 80.0 10 < th dose dependent rect. 24 2
402 60.41 wind 5.0 30 > th dose independent rect. 22 5
428 60.45 wind 3.0 90 > th dose independent rect. 15 7
453 60.49 precipitation 0.1 1440 > th dose independent rect. 22 1
454 60.49 atmosphere 1015.0 30 < th dose dependent rect. 8 1
455 60.49 precipitation 0.1 1440 > th dose dependent rect. 22 1
461 60.50 wind 5.0 30 > th dose dependent rect. 22 5
464 60.52 humidity 80.0 10 > th dose independent rect. 19 1
483 60.55 radiation 40.0 10 < th dose independent rect. 1 18
485 60.55 radiation 10.0 90 < th dose dependent rect. 8 2
489 60.56 humidity 90.0 90 > th dose independent rect. 2 1
541 60.66 wind 1.0 10 > th dose dependent rect. 15 8
543 60.67 humidity 50.0 270 < th dose dependent rect. 16 1
616 60.73 wind 7.0 10 > th dose dependent rect. 2 8
625 60.74 wind 7.0 10 > th dose dependent rect. 9 1
634 60.74 humidity 70.0 270 < th dose dependent rect. 17 14
648 60.77 radiation 40.0 10 < th dose independent rect. 1 22
663 60.78 wind 1.0 14400 > th dose independent rect. 16 1
711 60.82 radiation 40.0 10 < th dose independent rect. 3 16
712 60.82 temperature 30.0 30 < th dose dependent rect. 8 1
729 60.84 wind 3.0 90 < th dose dependent rect. 9 11
735 60.85 atmosphere 1000.0 30 > th dose independent rect. 19 6
770 60.88 temperature 10.0 1440 > th dose independent rect. 13 7
777 60.88 temperature 10.0 1440 > th dose independent rect. 20 17
780 60.88 atmosphere 995.0 1440 > th dose independent rect. 20 17
803 60.90 wind 3.0 90 > th dose independent rect. 1 21
808 60.91 wind 3.0 10 > th dose independent rect. 15 5
811 60.91 humidity 70.0 90 > th dose independent rect. 18 7
816 60.91 wind 3.0 43200 < th dose dependent rect. 10 2
832 60.92 radiation 20.0 14400 < th dose dependent rect. 20 6
837 60.93 temperature 30.0 90 < th dose independent rect. 17 8
854 60.94 wind 1.0 90 > th dose independent rect. 1 17
876 60.94 wind 9.0 90 < th dose dependent rect. 18 18
877 60.95 precipitation 0.1 90 > th dose independent rect. 23 2
884 60.95 precipitation 0.1 90 > th dose dependent rect. 23 2
894 60.96 wind 1.0 10 > th dose independent rect. 2 2
936 60.97 radiation 10.0 30 < th dose dependent rect. 9 19
941 60.98 wind 3.0 90 < th dose independent rect. 9 11
959 60.99 humidity 50.0 14400 > th dose independent rect. 19 7
978 60.99 atmosphere 995.0 30 > th dose dependent rect. 19 17
984 61.00 wind 3.0 90 > th dose independent rect. 3 19
985 61.00 wind 9.0 30 < th dose independent rect. 9 23
988 61.00 atmosphere 1010.0 10 < th dose dependent rect. 2 2