Os01g0871200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, C2H2-type domain containing protein.
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Os01g0871200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, C2H2-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.73 | 0.273 | 12 | 0.774 | 1.17 | 0.709 | 0.109 | 0.183 | 0.281 | 7.55 | 20.2 | 758 | -- | -- |
| 33.81 | 0.271 | 12 | 0.743 | 1.16 | 0.683 | 0.0603 | -- | 0.273 | 7.54 | 20.33 | 766 | -- | -- |
| 33.76 | 0.271 | 12 | 0.771 | 1.17 | 0.704 | -- | 0.151 | 0.28 | 7.54 | 20.25 | 759 | -- | -- |
| 33.82 | 0.271 | 12 | 0.745 | 1.16 | 0.682 | -- | -- | 0.273 | 7.54 | 20.33 | 766 | -- | -- |
| 98.7 | 0.463 | 12 | 0.859 | -- | 0.709 | -- | 0.428 | 0.323 | -- | 20.6 | 1411 | -- | -- |
| 46.48 | 0.32 | 12 | 0.995 | 1.09 | -- | -0.0249 | -- | 0.417 | 7.32 | -- | -- | -- | -- |
| 46.48 | 0.319 | 12 | 0.995 | 1.09 | -- | -- | -- | 0.418 | 7.32 | -- | -- | -- | -- |
| 98.21 | 0.462 | 12 | 0.714 | -- | 0.732 | -- | -- | 0.277 | -- | 20.39 | 1417 | -- | -- |
| 44.18 | 0.31 | 12 | -- | 1.08 | 0.997 | -- | -- | 0.13 | 7.6 | 20 | 2520 | -- | -- |
| 109.37 | 0.489 | 12 | 1.01 | -- | -- | -- | -- | 0.436 | -- | -- | -- | -- | -- |
| 72.57 | 0.398 | 12 | -- | 1.1 | -- | -- | -- | 0.307 | 7.26 | -- | -- | -- | -- |
| 104.3 | 0.476 | 12.1 | -- | -- | 0.957 | -- | -- | 0.133 | -- | 17.07 | 47520 | -- | -- |
| 136.46 | 0.545 | 12 | -- | -- | -- | -- | -- | 0.323 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.03 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 11 |
| 11 | 31.47 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 12 | 31.49 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 14 | 31.53 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 27 | 31.73 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 14 |
| 40 | 31.88 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 245 | 33.32 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 252 | 33.36 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 10 |
| 264 | 33.42 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 12 |
| 269 | 33.45 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 1 |
| 282 | 33.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 7 |
| 306 | 33.61 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 23 |
| 333 | 33.69 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 23 |
| 383 | 33.88 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 384 | 33.88 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 399 | 33.96 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 443 | 34.13 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 1 |
| 585 | 34.46 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 23 |
| 600 | 34.50 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 23 |
| 694 | 34.73 | temperature | 20 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 816 | 35.02 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |