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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0165200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, C2H2-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.76 (0.0144) R2 : 0.0101
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0656 (0.0304) R2dN8 : 0.0131 R2N8 : 0.0101
σ : 0.272
deviance : 33.92
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
32.1 0.266 2.33 -0.857 0.00371 -33.4 -0.244 -70.7 0.0746 12.2 15 704 -- --
33.51 0.272 2.76 0.0122 0.0137 0.0438 -0.309 -- 0.0676 12.4 15 704 -- --
32.35 0.265 2.35 -0.835 0.00955 -33.4 -- -70.8 0.0748 12.7 15 667 -- --
32.89 0.267 2.76 0.0364 0.0058 0.425 -- -- 0.0781 12.3 17 351 -- --
32.35 0.265 2.35 -0.83 -- -33.4 -- -70.8 0.0746 -- 14.99 661 -- --
33.51 0.271 2.76 0.0104 0.013 -- -0.303 -- 0.0671 12.4 -- -- -- --
33.89 0.273 2.76 -0.000855 0.0226 -- -- -- 0.066 15.8 -- -- -- --
32.89 0.267 2.76 0.0529 -- 0.451 -- -- 0.081 -- 17.05 351 -- --
32.93 0.267 2.76 -- 0.0203 0.411 -- -- 0.0734 17.2 17 351 -- --
33.92 0.272 2.76 -0.00179 -- -- -- -- 0.0654 -- -- -- -- --
33.89 0.272 2.76 -- 0.0226 -- -- -- 0.0661 15.8 -- -- -- --
32.96 0.267 2.76 -- -- 0.42 -- -- 0.0745 -- 17.01 351 -- --
33.92 0.272 2.76 -- -- -- -- -- 0.0656 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 29.50 wind 1.0 10 < th dose dependent rect. 9 15
7 29.76 wind 9.0 10 < th dose independent rect. 21 23
11 29.92 radiation 1.0 14400 < th dose dependent rect. 21 1
13 30.05 humidity 60.0 10 < th dose independent rect. 10 1
30 30.05 humidity 60.0 10 < th dose dependent rect. 10 1
92 30.07 temperature 10.0 1440 > th dose independent rect. 21 1
95 30.07 temperature 30.0 1440 < th dose independent rect. 21 1
99 30.07 humidity 50.0 1440 > th dose independent rect. 21 1
105 30.07 atmosphere 995.0 1440 > th dose independent rect. 21 1
106 30.07 radiation 1.0 1440 < th dose independent rect. 21 1
126 30.07 temperature 10.0 1440 > th dose independent rect. 22 23
129 30.07 radiation 10.0 1440 < th dose dependent rect. 21 1
135 30.08 humidity 90.0 30 < th dose independent rect. 20 1
136 30.08 atmosphere 1005.0 30 > th dose independent rect. 20 1
152 30.08 humidity 90.0 30 < th dose dependent rect. 20 1
167 30.09 wind 7.0 30 < th dose independent rect. 20 1
168 30.09 temperature 20.0 30 > th dose independent rect. 20 1
172 30.09 wind 1.0 30 > th dose dependent rect. 20 1
174 30.09 atmosphere 995.0 30 > th dose dependent rect. 20 1
191 30.10 wind 1.0 30 > th dose independent rect. 20 1
195 30.10 temperature 10.0 30 > th dose independent rect. 20 1
197 30.10 temperature 30.0 30 < th dose independent rect. 20 1
198 30.10 humidity 50.0 30 > th dose independent rect. 20 1
203 30.10 atmosphere 1010.0 30 < th dose independent rect. 20 1
205 30.10 radiation 1.0 30 < th dose independent rect. 20 1
210 30.10 precipitation 0.1 30 < th dose independent rect. 20 1
211 30.10 temperature 10.0 30 > th dose independent rect. 21 23
212 30.10 wind 7.0 30 < th dose dependent rect. 20 1
214 30.10 temperature 10.0 30 > th dose dependent rect. 20 1
217 30.10 temperature 30.0 30 < th dose dependent rect. 20 1
218 30.10 humidity 50.0 30 > th dose dependent rect. 20 1
219 30.10 radiation 1.0 30 < th dose dependent rect. 20 1
225 30.10 precipitation 0.1 30 < th dose dependent rect. 20 1
235 30.12 atmosphere 1015.0 30 < th dose dependent rect. 20 1
283 30.18 humidity 60.0 1440 > th dose independent rect. 22 11
298 30.24 precipitation 0.1 10 < th dose independent rect. 21 23
300 30.24 precipitation 0.1 10 < th dose dependent rect. 21 23
306 30.31 atmosphere 995.0 10 > th dose independent rect. 21 23
307 30.32 wind 1.0 10 < th dose independent rect. 6 4
312 30.36 wind 1.0 10 < th dose independent rect. 6 19
313 30.36 radiation 40.0 10 > th dose dependent rect. 9 1
373 30.39 wind 1.0 10 < th dose independent rect. 6 9
398 30.40 wind 1.0 10 < th dose dependent rect. 9 5
418 30.41 wind 1.0 10 < th dose independent rect. 9 15
422 30.42 humidity 60.0 1440 < th dose dependent rect. 8 1
530 30.43 humidity 60.0 10 < th dose dependent rect. 17 17
535 30.44 humidity 60.0 30 < th dose independent rect. 17 17
539 30.44 wind 1.0 10 < th dose dependent rect. 9 3
568 30.45 wind 1.0 10 < th dose dependent rect. 9 1
598 30.47 humidity 60.0 1440 > th dose independent rect. 8 1
599 30.47 wind 1.0 10 < th dose independent rect. 9 5
612 30.48 wind 1.0 10 < th dose independent rect. 9 1
645 30.52 radiation 40.0 10 > th dose independent rect. 9 2
667 30.53 humidity 60.0 1440 > th dose independent rect. 5 4
782 30.60 temperature 10.0 30 > th dose dependent rect. 21 23
965 30.79 wind 9.0 1440 < th dose independent rect. 21 1
999 30.89 wind 1.0 10 < th dose dependent sin 20 NA