Os09g0485600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to WIP1 protein (Fragment).
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Os09g0485600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to WIP1 protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 141.64 | 0.559 | 5.11 | -3.19 | 1.07 | -0.175 | 0.442 | 4.64 | -0.152 | 8.2 | 1001 | 62 | -- | -- |
| 143.53 | 0.558 | 5.06 | -2.87 | 1.05 | 0.637 | 0.297 | -- | -0.158 | 8.33 | 1000 | 64 | -- | -- |
| 142.24 | 0.555 | 5.11 | -3.18 | 1.07 | -0.18 | -- | 4.68 | -0.152 | 8.22 | 1001 | 67 | -- | -- |
| 143.66 | 0.558 | 5.06 | -2.86 | 1.08 | 0.663 | -- | -- | -0.159 | 8.23 | 1000 | 109 | -- | -- |
| 204.72 | 0.67 | 5.12 | -3.05 | -- | 0.124 | -- | 3.08 | -0.139 | -- | 1001 | 67 | -- | -- |
| 154.96 | 0.584 | 5.05 | -2.99 | 1.08 | -- | 0.424 | -- | -0.114 | 8.14 | -- | -- | -- | -- |
| 155.5 | 0.584 | 5.05 | -2.98 | 1.08 | -- | -- | -- | -0.114 | 8.17 | -- | -- | -- | -- |
| 206.52 | 0.669 | 5.09 | -2.85 | -- | 0.699 | -- | -- | -0.15 | -- | 1001 | 206 | -- | -- |
| 352.39 | 0.874 | 5 | -- | 1.06 | 1.16 | -- | -- | 0.117 | 8.49 | 1000 | 107 | -- | -- |
| 219.77 | 0.693 | 5.08 | -2.97 | -- | -- | -- | -- | -0.102 | -- | -- | -- | -- | -- |
| 389.7 | 0.923 | 4.97 | -- | 1.07 | -- | -- | -- | 0.218 | 8.37 | -- | -- | -- | -- |
| 413.4 | 0.947 | 5.03 | -- | -- | 1.18 | -- | -- | 0.121 | -- | 1001 | 206 | -- | -- |
| 452.82 | 0.993 | 5 | -- | -- | -- | -- | -- | 0.228 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 133.11 | temperature | 25 | 270 | > th | dose dependent | sin | 8 | NA |
| 3 | 133.16 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 12 |
| 10 | 134.04 | temperature | 25 | 270 | > th | dose dependent | rect. | 5 | 6 |
| 30 | 134.80 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 33 | 134.85 | humidity | 90 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 48 | 135.40 | humidity | 90 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 56 | 136.16 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 4 | 15 |
| 64 | 136.29 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 9 | 19 |
| 74 | 136.50 | wind | 5 | 14400 | < th | dose dependent | rect. | 11 | 4 |
| 80 | 136.61 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 9 |
| 103 | 137.08 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 137 | 137.32 | wind | 1 | 14400 | > th | dose dependent | rect. | 11 | 6 |
| 139 | 137.34 | temperature | 30 | 90 | < th | dose independent | rect. | 4 | 14 |
| 142 | 137.37 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 4 | 15 |
| 145 | 137.41 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 3 | 22 |
| 150 | 137.44 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 172 | 137.54 | wind | 1 | 14400 | > th | dose dependent | rect. | 11 | 8 |
| 176 | 137.56 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 5 | 14 |
| 183 | 137.65 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 7 |
| 186 | 137.67 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 192 | 137.70 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 5 | 14 |
| 197 | 137.72 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 9 |
| 199 | 137.75 | temperature | 25 | 270 | < th | dose independent | sin | 7 | NA |
| 206 | 137.79 | temperature | 30 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 259 | 137.99 | temperature | 30 | 14400 | < th | dose independent | rect. | 22 | 11 |
| 261 | 138.00 | temperature | 30 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 262 | 138.00 | temperature | 30 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 289 | 138.12 | wind | 3 | 14400 | > th | dose dependent | rect. | 15 | 2 |
| 292 | 138.13 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 12 |
| 296 | 138.13 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 300 | 138.15 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 4 | 21 |
| 327 | 138.23 | wind | 3 | 14400 | > th | dose independent | rect. | 11 | 4 |
| 345 | 138.31 | wind | 9 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 381 | 138.48 | wind | 3 | 14400 | < th | dose independent | rect. | 11 | 4 |
| 412 | 138.54 | wind | 3 | 14400 | > th | dose independent | rect. | 11 | 10 |
| 438 | 138.62 | atmosphere | 1005 | 720 | < th | dose dependent | rect. | 7 | 3 |
| 439 | 138.62 | humidity | 50 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 449 | 138.65 | wind | 3 | 14400 | < th | dose independent | rect. | 11 | 10 |
| 465 | 138.73 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 5 |
| 469 | 138.74 | humidity | 70 | 14400 | > th | dose dependent | rect. | 1 | 8 |
| 489 | 138.80 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 8 | 20 |
| 491 | 138.81 | humidity | 70 | 14400 | > th | dose dependent | rect. | 3 | 6 |
| 500 | 138.82 | atmosphere | 1005 | 720 | < th | dose dependent | rect. | 9 | 1 |
| 523 | 138.88 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 8 | 11 |
| 524 | 138.88 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 529 | 138.90 | wind | 1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 545 | 138.94 | temperature | 25 | 270 | > th | dose independent | sin | 7 | NA |
| 558 | 138.97 | wind | 3 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 572 | 139.00 | wind | 3 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 632 | 139.16 | wind | 3 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 641 | 139.18 | humidity | 90 | 4320 | > th | dose dependent | rect. | 5 | 10 |
| 661 | 139.23 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 21 |
| 693 | 139.30 | wind | 5 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 697 | 139.31 | humidity | 90 | 4320 | > th | dose dependent | rect. | 5 | 8 |
| 727 | 139.36 | temperature | 25 | 270 | < th | dose independent | rect. | 20 | 15 |
| 749 | 139.40 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 8 | 19 |
| 761 | 139.41 | humidity | 90 | 1440 | > th | dose dependent | rect. | 24 | 11 |
| 762 | 139.41 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 6 | 11 |
| 769 | 139.43 | humidity | 90 | 1440 | > th | dose dependent | rect. | 24 | 7 |
| 949 | 139.81 | radiation | 40 | 270 | > th | dose dependent | rect. | 14 | 21 |
| 952 | 139.82 | humidity | 90 | 14400 | < th | dose dependent | rect. | 24 | 9 |
| 966 | 139.84 | wind | 5 | 14400 | < th | dose dependent | sin | 21 | NA |
| 985 | 139.87 | humidity | 80 | 14400 | > th | dose independent | rect. | 22 | 13 |
| 986 | 139.87 | wind | 5 | 14400 | < th | dose dependent | rect. | 17 | 2 |