BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0514600 Os05g0514600|AK107211
(242 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0514600 2OG-Fe(II) oxygenase domain containing protein 440 e-124
Os01g0757200 Similar to GA 2-oxidase 4 153 1e-37
Os05g0560900 Isopenicillin N synthase family protein 138 4e-33
Os01g0209700 Similar to GA 2-oxidase 5 112 2e-25
Os05g0158600 OsGA2ox1 102 2e-22
Os05g0178100 GA 3beta-hydroxylase 85 4e-17
Os01g0935400 2OG-Fe(II) oxygenase domain containing protein 74 1e-13
Os01g0177400 GA 3beta-hydroxylase 72 4e-13
Os01g0332200 Conserved hypothetical protein 70 1e-12
Os03g0618300 Isopenicillin N synthase family protein 69 2e-12
AK063917 69 3e-12
Os10g0559500 2OG-Fe(II) oxygenase domain containing protein 69 3e-12
Os04g0522500 Isopenicillin N synthase family protein 67 8e-12
Os08g0480200 2OG-Fe(II) oxygenase domain containing protein 67 1e-11
Os07g0103500 2OG-Fe(II) oxygenase domain containing protein 65 4e-11
>Os05g0514600 2OG-Fe(II) oxygenase domain containing protein
Length = 242
Score = 440 bits (1132), Expect = e-124, Method: Compositional matrix adjust.
Identities = 230/242 (95%), Positives = 230/242 (95%)
Query: 1 MVVLAKPAALEQISLVRSPSVEDNFGAGLPVVDLAADGAAGEVVRACERFGFFKXXXXXX 60
MVVLAKPAALEQISLVRSPSVEDNFGAGLPVVDLAADGAAGEVVRACERFGFFK
Sbjct: 1 MVVLAKPAALEQISLVRSPSVEDNFGAGLPVVDLAADGAAGEVVRACERFGFFKVVSHGV 60
Query: 61 XXXXXXRLEAEAVRFFASPQAAKDAHGPASPFGYGSKRIGRNGDMGWLEYLLQVALHHDA 120
RLEAEAVRFFASPQAAKDAHGPASPFGYGSKRIGRNGDMGWLEYLLQVALHHDA
Sbjct: 61 GEGVVGRLEAEAVRFFASPQAAKDAHGPASPFGYGSKRIGRNGDMGWLEYLLQVALHHDA 120
Query: 121 DAGDHQWVTVPPDPASFLVIVGDSLQVMTNGRMRSVRHRVVANKLKSRVSMIYFGGPPLE 180
DAGDHQWVTVPPDPASFLVIVGDSLQVMTNGRMRSVRHRVVANKLKSRVSMIYFGGPPLE
Sbjct: 121 DAGDHQWVTVPPDPASFLVIVGDSLQVMTNGRMRSVRHRVVANKLKSRVSMIYFGGPPLE 180
Query: 181 QRIAPLRQLLVAGVGNGEEEEQSRYEEFTWGEYKKAAYLSRLSDNRLAPFHRQPPPVANP 240
QRIAPLRQLLVAGVGNGEEEEQSRYEEFTWGEYKKAAYLSRLSDNRLAPFHRQPPPVANP
Sbjct: 181 QRIAPLRQLLVAGVGNGEEEEQSRYEEFTWGEYKKAAYLSRLSDNRLAPFHRQPPPVANP 240
Query: 241 LA 242
LA
Sbjct: 241 LA 242
>Os01g0757200 Similar to GA 2-oxidase 4
Length = 327
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/122 (66%), Positives = 89/122 (72%), Gaps = 13/122 (10%)
Query: 112 LQVALHHDADAGDHQWVTVPPDPASFLVIVGDSLQVMTNGRMRSVRHRVVANKLKSRVSM 171
LQ+AL D QWV+VP D SF V VGDSLQV+TNGR +SV+HRVVAN LKSRVS
Sbjct: 219 LQIALR------DGQWVSVPSDRDSFFVNVGDSLQVLTNGRFKSVKHRVVANSLKSRVSF 272
Query: 172 IYFGGPPLEQRIAPLRQLLVAGVGNGEEEEQSRYEEFTWGEYKKAAYLSRLSDNRLAPFH 231
IYFGGPPL QRIAPL QLL E EQS Y+EFTW EYKKAAY SRL DNRLA F
Sbjct: 273 IYFGGPPLAQRIAPLPQLL-------GEGEQSLYKEFTWDEYKKAAYKSRLGDNRLAQFE 325
Query: 232 RQ 233
++
Sbjct: 326 KK 327
Score = 124 bits (310), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 65/110 (59%), Positives = 75/110 (68%), Gaps = 1/110 (0%)
Query: 1 MVVLAKPAALEQISLVRSPSVEDNFGAGLPVVDLAADGAAGEVVRACERFGFFKXXXXXX 60
MVVLA P A++ I L+RSP D F +G+PVVDL + GAA VV ACER+GFFK
Sbjct: 1 MVVLAGPPAVDHIPLLRSPDPGDVF-SGVPVVDLGSPGAARAVVDACERYGFFKVVNHGV 59
Query: 61 XXXXXXRLEAEAVRFFASPQAAKDAHGPASPFGYGSKRIGRNGDMGWLEY 110
+ E+EAVRFF+ Q KD GPA PFGYGSKRIG NGDMGWLEY
Sbjct: 60 ATDTMDKAESEAVRFFSQTQPDKDRSGPAYPFGYGSKRIGFNGDMGWLEY 109
>Os05g0560900 Isopenicillin N synthase family protein
Length = 353
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 73/123 (59%), Positives = 86/123 (69%), Gaps = 9/123 (7%)
Query: 112 LQVALHHDADAGDHQWVTVPPDPASFLVIVGDSLQVMTNGRMRSVRHRVVA-NKLKSRVS 170
LQ+ L D + +WV VPPDP SF V VGDSLQV+TNGR RSV+HRV+A +SR+S
Sbjct: 227 LQILLRGDYSS-PARWVPVPPDPDSFFVNVGDSLQVLTNGRFRSVKHRVLAPEGEESRLS 285
Query: 171 MIYFGGPPLEQRIAPLRQLLVAGVGNGEEEEQSRYEEFTWGEYKKAAYLSRLSDNRLAPF 230
+IYFGGP QRIAPL Q++ E EQS Y EFTWGEYKKAAY +RL DNRL P+
Sbjct: 286 VIYFGGPAASQRIAPLEQVM-------REGEQSLYREFTWGEYKKAAYKTRLGDNRLGPY 338
Query: 231 HRQ 233
Q
Sbjct: 339 ELQ 341
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 1 MVVLAKPAALEQISLVRSPSVEDNFG--AGLPVVDLAADGAAGEVVRACERFGFFKXXXX 58
MV + P+++E I LVR P N G A +P +DL+A GAA V AC GFFK
Sbjct: 1 MVAITAPSSIEHIPLVRCPK-GANAGPQAVIPCIDLSAPGAAAAVADACRTLGFFKATNH 59
Query: 59 XXXXXXXXRLEAEAVRFFASPQAAK-DAHGPASPFGYGSKRIGRNGDMGWLEY 110
LE+ A+ FFA P K D GPA P GYGSK IG NGD+GWLEY
Sbjct: 60 GVPAGLADALESSAMAFFALPHQEKLDMSGPARPLGYGSKSIGSNGDVGWLEY 112
>Os01g0209700 Similar to GA 2-oxidase 5
Length = 335
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/110 (55%), Positives = 74/110 (67%), Gaps = 9/110 (8%)
Query: 124 DHQWVTVP--PDPASFLVIVGDSLQVMTNGRMRSVRHRVVANKLKSRVSMIYFGGPPLEQ 181
D W +VP D SF V VGD+LQV+TNGR RSV+HRVV N KSRVSM++FGGPP +
Sbjct: 232 DGAWASVPHDGDGDSFFVNVGDTLQVLTNGRFRSVKHRVVVNSEKSRVSMVFFGGPPPGE 291
Query: 182 RIAPLRQLLVAGVGNGEEEEQSRYEEFTWGEYKKAAYLSRLSDNRLAPFH 231
R+APL LL G+G +SRY EFTW EYK + RL+D+RL F
Sbjct: 292 RLAPLPALL----GDG---GRSRYREFTWKEYKGSGCKGRLADDRLCRFE 334
>Os05g0158600 OsGA2ox1
Length = 382
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 62/108 (57%), Gaps = 7/108 (6%)
Query: 123 GDHQWVTVPPDPASFLVIVGDSLQVMTNGRMRSVRHRVVANKLKSRVSMIYFGGPPLEQR 182
G WV VP DP++ V VGD LQ +TNGR+ S+RHRV+A + R+S IYF PPL R
Sbjct: 267 GKEMWVQVPSDPSAIFVNVGDVLQALTNGRLISIRHRVIATACRPRLSTIYFASPPLHAR 326
Query: 183 IAPLRQLLVAGVGNGEEEEQSRYEEFTWGEYKKAAYLSRLSDNRLAPF 230
I+ L + + A RY FTW EYK Y RLS +RL F
Sbjct: 327 ISALPETITAS-------SPRRYRSFTWAEYKTTMYSLRLSHSRLELF 367
>Os05g0178100 GA 3beta-hydroxylase
Length = 384
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 63/116 (54%), Gaps = 17/116 (14%)
Query: 104 DMGWLEYLLQVA------LHHDADAGDHQWVTVPPDPASFLVIVGDSLQVMTNGRMRSVR 157
D G+ ++LQ L H D +WVTVP P + +V+VGD V+TNGR SV
Sbjct: 252 DSGFFTFILQSPVPGLQLLRHRPD----RWVTVPGTPGALIVVVGDLFHVLTNGRFHSVF 307
Query: 158 HRVVANKLKSRVSMIYFGGPPLEQRIAPLRQLLVAGVGNGEEEEQSRYEEFTWGEY 213
HR V N+ + R+SM YF GPP + ++ PL V G E ++ Y+ TW EY
Sbjct: 308 HRAVVNRERDRISMPYFLGPPADMKVTPL-------VAAGSPESKAVYQAVTWPEY 356
>Os01g0935400 2OG-Fe(II) oxygenase domain containing protein
Length = 366
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 7/106 (6%)
Query: 127 WVTVPPDPASFLVIVGDSLQVMTNGRMRSVRHRVVANKLKSRVSMIYFGGPPLEQRIAPL 186
WV V P P + +V VGD+L+V+TNGR +SV HR VA+ R+S++ F P + + PL
Sbjct: 267 WVAVHPVPGALVVNVGDTLEVLTNGRYKSVEHRAVASGEHDRMSVVTFYAPAYDVELGPL 326
Query: 187 RQLLVAGVGNGEEEEQSRYEEFTWGEYKKAAYLSRLSDNRLAPFHR 232
+L+ G E RY + GEY + SRL + F +
Sbjct: 327 PELVADG-------EPRRYRTYNHGEYSRHYVTSRLQGKKTLEFAK 365
>Os01g0177400 GA 3beta-hydroxylase
Length = 370
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 59/114 (51%), Gaps = 9/114 (7%)
Query: 102 NGDMGWLEYLLQ--VALHHDADAGDHQWVTVPPDPASFLVIVGDSLQVMTNGRMRSVRHR 159
+ D G+ ++LQ V G +WV VP +F+V VGD ++TNGR SV HR
Sbjct: 224 HTDSGFFTFVLQSLVPGLQLFRRGPDRWVAVPAVAGAFVVNVGDLFHILTNGRFHSVYHR 283
Query: 160 VVANKLKSRVSMIYFGGPPLEQRIAPLRQLLVAGVGNGEEEEQSRYEEFTWGEY 213
V N+ + RVS+ YF GPP + +APL + + AG Y TW EY
Sbjct: 284 AVVNRDRDRVSLGYFLGPPPDAEVAPLPEAVPAG-------RSPAYRAVTWPEY 330
>Os01g0332200 Conserved hypothetical protein
Length = 87
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 155 SVRHRVVANKLKSRVSMIYFGGPPLEQRIAPLRQLLVAGVGNGEEEEQSRYEEFTWGEYK 214
S+RHRVV K R+S IYF PPL RI+ L + + AG RY FTW EYK
Sbjct: 1 SIRHRVVVGTGKPRLSTIYFAAPPLHARISALPETVAAGAPR-------RYRAFTWAEYK 53
Query: 215 KAAYLSRLSDNRLAPFH 231
+ Y RLS NRL FH
Sbjct: 54 RTMYTLRLSHNRLDLFH 70
>Os03g0618300 Isopenicillin N synthase family protein
Length = 352
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 66/143 (46%), Gaps = 11/143 (7%)
Query: 75 FFASPQAA--KDAHGPASPFGYGSKRIGRNGDMGWLEYLLQ--VALHHDADAGDHQWVTV 130
FF Q + H P P + +GR+ D G L L Q V D +WV V
Sbjct: 192 FFKDDQTTFIRLNHYPPCPSPDLALGVGRHKDAGALTVLYQDDVGGLDVRRRSDGEWVRV 251
Query: 131 PPDPASFLVIVGDSLQVMTNGRMRSVRHRVVANKLKSRVSMIYFGGPPLEQRIAPLRQLL 190
P P SF++ VGD +QV +N R S HRV N K R S+ +F P + PL +++
Sbjct: 252 RPVPHSFIINVGDIIQVWSNDRYESAEHRVAVNVEKERFSIPFFFNPAGHTMVEPLEEVV 311
Query: 191 VAGVGNGEEEEQSRYEEFTWGEY 213
+E +RY + WGE+
Sbjct: 312 -------SDESPARYNPYNWGEF 327
>AK063917
Length = 318
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 66/143 (46%), Gaps = 11/143 (7%)
Query: 75 FFASPQAA--KDAHGPASPFGYGSKRIGRNGDMGWLEYLLQ--VALHHDADAGDHQWVTV 130
FF Q + H P P + +GR+ D G L L Q V D +WV V
Sbjct: 158 FFKDDQTTFIRLNHYPPCPSPDLALGVGRHKDAGALTVLYQDDVGGLDVRRRSDGEWVRV 217
Query: 131 PPDPASFLVIVGDSLQVMTNGRMRSVRHRVVANKLKSRVSMIYFGGPPLEQRIAPLRQLL 190
P P SF++ VGD +QV +N R S HRV N K R S+ +F P + PL +++
Sbjct: 218 RPVPHSFIINVGDIIQVWSNDRYESAEHRVAVNVEKERFSIPFFFNPAGHTMVEPLEEVV 277
Query: 191 VAGVGNGEEEEQSRYEEFTWGEY 213
+E +RY + WGE+
Sbjct: 278 -------SDESPARYNPYNWGEF 293
>Os10g0559500 2OG-Fe(II) oxygenase domain containing protein
Length = 303
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 19/154 (12%)
Query: 79 PQAAKDAHGPASPFGYGSKRIGR--NGDMGWLEYLLQVALHHDADA----GDHQWVTVPP 132
PQ+ + H P P +K +G + D + LLQV +D D +W V
Sbjct: 154 PQSVRINHYP--PCSQANKVLGLSPHTDGVGMTLLLQV---NDVQGLQIRKDGRWFAVKN 208
Query: 133 DPASFLVIVGDSLQVMTNGRMRSVRHRVVANKLKSRVSMIYFGGPPLEQRIAPLRQLLVA 192
P + +V VGD L+++TNG+ +S+ HR V N K R+++ F PL + PL++LL+
Sbjct: 209 LPGALVVNVGDVLEILTNGKYKSIEHRAVINPDKERITLAAFQSVPLSSTVGPLQELLMK 268
Query: 193 GVGNGEEEEQSRYEEFTWGEYKKAAYLSRLSDNR 226
G ++RY+ E+ K + ++L R
Sbjct: 269 G--------EARYKTVDGAEFTKGYFAAKLEGRR 294
>Os04g0522500 Isopenicillin N synthase family protein
Length = 358
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 61/128 (47%), Gaps = 13/128 (10%)
Query: 88 PASPFGYGSKRIGRNGDMGWLEYLLQVALHHDADAGDHQWVTVPPDPASFLVIVGDSLQV 147
PA PF + + + D +L L Q + D +WV V P P + +V +GD Q
Sbjct: 219 PACPFAADTFGLVPHTDSDFLTVLCQDQVGGLHLMKDSRWVAVRPRPDALVVNIGDLFQA 278
Query: 148 MTNGRMRSVRHRVVANKLKSRVSMIYFGGPPLEQRIAPLRQLLVAGVGNGEEEEQSRYEE 207
+N R +SV H+VVAN R+S+ YF + P LV G E S Y
Sbjct: 279 WSNNRYKSVEHKVVANAKTDRLSVAYF--------LCPSYDSLVGTCG-----EPSPYRA 325
Query: 208 FTWGEYKK 215
FT+GEY+K
Sbjct: 326 FTFGEYRK 333
>Os08g0480200 2OG-Fe(II) oxygenase domain containing protein
Length = 337
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 102 NGDMGWLEYLLQVALHHDADAGDHQWVTVPPDPASFLVIVGDSLQVMTNGRMRSVRHRVV 161
+ D G L L Q + D +W+ P P SF VI GD L+++TNGR + V HR V
Sbjct: 208 HSDHGLLTLLFQNGVDGLQVKHDGEWLLAKPLPGSFFVIAGDQLEIVTNGRYKGVLHRAV 267
Query: 162 ANKLKSRVSMIYFGGPPLEQRIAPLRQLLVAGVGNGEEEEQSRYEEF 208
+SR+S + GP ++ + PL ++ A G G E RY ++
Sbjct: 268 VGGEQSRMSFVSLIGPCMDTVVEPLPEM--AADGRGLEFRGIRYRDY 312
>Os07g0103500 2OG-Fe(II) oxygenase domain containing protein
Length = 341
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 126 QWVTVPPDPASFLVIVGDSLQVMTNGRMRSVRHRVVANKLKSRVSMIYFGGPPLEQRIAP 185
+WV V P P++ +V VGD LQ +N +SV HRV+AN R SM +F P I P
Sbjct: 239 RWVAVKPSPSTLIVNVGDLLQAWSNDVYKSVEHRVMANATLERFSMAFFLCPSYHTLIIP 298
Query: 186 LRQLLVAGVGNGEEEEQSRYEEFTWGEYKKAAYLSRLSDNRLAPFHR 232
+ ++ + Y FT+GEY+K S R HR
Sbjct: 299 --------SSSHVHDDDAHYRSFTFGEYRKQIMEDVRSTGRKIGLHR 337
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,430,317
Number of extensions: 388542
Number of successful extensions: 1084
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 1073
Number of HSP's successfully gapped: 20
Length of query: 242
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 144
Effective length of database: 11,918,829
Effective search space: 1716311376
Effective search space used: 1716311376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)