Os10g0559500 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0559500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : 2OG-Fe(II) oxygenase domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.28	(0.0417)	R²	:	0.505
β₁	:	1.03	(0.158)	R²_dD	:	0.0512	R²_D	:	-0.0235
β₂	:	1.94	(0.104)	R²_dC	:	0.396	R²_C	:	0.275
β₃	:	-1.63	(0.129)	R²_dE	:	0.198	R²_E	:	-0.00262
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.607	(0.0898)	R²_dN8	:	0.0677	R²_N8	:	0.019
σ	:	0.778
deviance	:	279.18
__

_____

C
peak time of C	:	2.41
E
wheather	:	temperature
threshold	:	25.22
memory length	:	1259
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
273.54	0.777	5.26	1.16	1.89	-1.62	-1.3	0.62	0.649	2.52	25.11	1341	--	--
273.69	0.771	5.27	1.01	1.89	-1.55	-1.26	--	0.621	2.52	25.11	1328	--	--
279.34	0.778	5.25	1.2	1.91	-1.66	--	0.585	0.656	2.48	25.23	1308	--	--
279.18	0.778	5.28	1.03	1.94	-1.63	--	--	0.607	2.41	25.22	1259	--	--
393.73	0.929	5.23	1.17	--	-2.63	--	2.35	0.709	--	25.1	1768	--	--
368.38	0.9	5.32	0.467	1.68	--	-1.6	--	0.426	2.58	--	--	--	--
377.52	0.91	5.31	0.508	1.67	--	--	--	0.436	2.56	--	--	--	--
392.44	0.927	5.26	0.911	--	-2.47	--	--	0.672	--	24.81	1777	--	--
304.94	0.813	5.31	--	1.93	-1.45	--	--	0.468	2.32	25.3	1205	--	--
541.26	1.09	5.3	0.579	--	--	--	--	0.477	--	--	--	--	--
384.32	0.917	5.33	--	1.68	--	--	--	0.379	2.57	--	--	--	--
413.93	0.951	5.28	--	--	-2.34	--	--	0.563	--	24.81	1777	--	--
550.1	1.09	5.32	--	--	--	--	--	0.413	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	263.42	radiation	1	1440	> th	dose independent	rect.	11	19
2	263.74	radiation	1	1440	< th	dose independent	rect.	11	19
10	266.30	radiation	1	1440	< th	dose dependent	rect.	9	21
11	266.31	radiation	1	1440	< th	dose dependent	rect.	11	19
18	266.70	wind	5	43200	< th	dose independent	rect.	11	1
20	266.82	radiation	1	14400	> th	dose independent	rect.	18	11
24	267.18	wind	5	43200	> th	dose independent	rect.	11	1
31	268.16	radiation	20	14400	> th	dose dependent	rect.	16	1
48	268.57	humidity	90	43200	< th	dose independent	rect.	20	9
53	268.85	temperature	25	4320	< th	dose independent	rect.	8	1
56	269.14	temperature	25	4320	< th	dose independent	rect.	7	3
66	269.91	radiation	40	14400	< th	dose dependent	rect.	18	6
72	270.09	radiation	30	14400	< th	dose dependent	rect.	18	8
87	270.25	radiation	40	14400	< th	dose dependent	rect.	16	1
92	270.28	radiation	30	14400	< th	dose dependent	rect.	18	3
107	270.43	radiation	20	14400	< th	dose dependent	rect.	18	1
108	270.44	radiation	1	14400	> th	dose dependent	rect.	16	1
111	270.45	radiation	40	14400	< th	dose dependent	rect.	16	13
115	270.52	radiation	40	14400	< th	dose dependent	rect.	16	8
123	270.54	radiation	10	14400	> th	dose independent	rect.	17	13
125	270.54	radiation	40	14400	< th	dose dependent	rect.	16	5
127	270.55	radiation	40	14400	< th	dose dependent	rect.	16	3
143	270.69	temperature	25	4320	> th	dose independent	rect.	8	1
164	271.01	radiation	30	14400	> th	dose independent	rect.	15	2
194	271.11	radiation	1	14400	< th	dose independent	rect.	18	11
196	271.16	radiation	10	14400	> th	dose independent	rect.	16	2
209	271.18	radiation	10	14400	< th	dose dependent	rect.	16	13
211	271.32	radiation	1	1440	< th	dose dependent	rect.	11	16
212	271.33	radiation	1	1440	< th	dose dependent	rect.	11	12
225	271.35	radiation	1	1440	< th	dose dependent	rect.	11	8
227	271.36	radiation	1	1440	< th	dose dependent	rect.	11	10
235	271.46	radiation	1	1440	< th	dose dependent	rect.	9	18
285	271.80	radiation	1	1440	< th	dose dependent	sin	22	NA
306	271.93	humidity	90	43200	> th	dose dependent	rect.	21	3
321	272.05	humidity	90	43200	> th	dose independent	rect.	20	9
328	272.18	humidity	90	43200	< th	dose independent	rect.	24	2
333	272.29	humidity	90	43200	> th	dose dependent	rect.	21	1
345	272.32	radiation	1	1440	> th	dose independent	rect.	11	8
394	272.60	humidity	90	43200	> th	dose independent	rect.	21	1
430	272.73	temperature	20	14400	> th	dose independent	rect.	4	1
434	272.78	radiation	1	14400	> th	dose independent	rect.	18	1
473	272.88	radiation	1	43200	< th	dose dependent	rect.	4	1
505	272.94	temperature	25	1440	> th	dose dependent	rect.	13	1
519	272.99	humidity	80	43200	> th	dose dependent	rect.	17	10
523	273.00	radiation	1	14400	< th	dose dependent	rect.	8	15
524	273.01	radiation	1	1440	> th	dose independent	sin	15	NA
535	273.03	radiation	1	14400	< th	dose dependent	rect.	8	11
536	273.03	radiation	1	14400	< th	dose dependent	rect.	8	13
539	273.03	radiation	1	14400	< th	dose dependent	rect.	8	21
555	273.08	wind	5	43200	> th	dose dependent	rect.	11	2
560	273.12	wind	9	43200	< th	dose independent	rect.	16	1
562	273.12	radiation	1	14400	< th	dose dependent	rect.	8	19
576	273.18	temperature	20	14400	< th	dose independent	rect.	4	1
615	273.28	radiation	1	14400	< th	dose dependent	sin	18	NA
620	273.31	humidity	90	43200	> th	dose dependent	rect.	20	7
650	273.41	humidity	90	43200	< th	dose independent	sin	12	NA
693	273.62	radiation	1	1440	< th	dose independent	rect.	11	12
694	273.62	temperature	25	1440	> th	dose dependent	rect.	13	4
700	273.64	temperature	25	1440	> th	dose dependent	rect.	13	12
708	273.66	radiation	1	1440	< th	dose independent	rect.	11	8
709	273.66	radiation	1	1440	< th	dose independent	rect.	11	10
710	273.66	radiation	1	1440	< th	dose independent	rect.	11	16
724	273.70	temperature	25	1440	> th	dose dependent	rect.	13	7
734	273.74	radiation	30	14400	< th	dose independent	rect.	15	9
740	273.76	radiation	30	14400	< th	dose independent	rect.	15	6
744	273.77	radiation	30	14400	< th	dose independent	rect.	15	4
769	273.80	radiation	1	1440	< th	dose independent	sin	15	NA
782	273.89	temperature	25	1440	> th	dose dependent	rect.	13	19
787	273.92	temperature	25	1440	> th	dose dependent	rect.	11	17
805	273.97	temperature	25	1440	> th	dose dependent	sin	18	NA
894	274.31	humidity	90	43200	< th	dose independent	rect.	21	1
943	274.45	radiation	1	14400	< th	dose independent	rect.	16	13
947	274.50	temperature	20	43200	> th	dose independent	rect.	21	3
951	274.52	temperature	20	43200	< th	dose independent	rect.	21	4
957	274.54	radiation	1	1440	< th	dose dependent	rect.	5	18
963	274.56	radiation	1	1440	< th	dose dependent	rect.	5	16
966	274.57	radiation	1	1440	< th	dose dependent	rect.	5	14
974	274.60	radiation	1	14400	< th	dose independent	rect.	16	8
976	274.60	radiation	1	1440	< th	dose dependent	rect.	5	22
978	274.61	humidity	90	43200	< th	dose independent	rect.	10	1
983	274.62	radiation	1	14400	< th	dose independent	rect.	16	5
992	274.63	radiation	1	14400	< th	dose independent	rect.	16	3
995	274.63	radiation	1	14400	< th	dose independent	rect.	16	11