Os01g0177400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GA 3beta-hydroxylase.
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Os01g0177400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GA 3beta-hydroxylase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 581.81 | 1.13 | 5.97 | -4.56 | 2.55 | 3.11 | -1.49 | 6.08 | -0.766 | 11.1 | 25.27 | 473 | -- | -- |
| 627.2 | 1.17 | 5.89 | -3.58 | 2.47 | 2.95 | -1.13 | -- | -0.668 | 11.6 | 31.89 | 508 | -- | -- |
| 589.63 | 1.13 | 5.97 | -4.59 | 2.65 | 3.1 | -- | 5.95 | -0.777 | 11.1 | 25.09 | 419 | -- | -- |
| 633.39 | 1.17 | 5.87 | -3.57 | 2.53 | 2.87 | -- | -- | -0.607 | 11.7 | 31.27 | 477 | -- | -- |
| 885.68 | 1.39 | 5.94 | -3.96 | -- | 4.4 | -- | 4.29 | -0.483 | -- | 29.5 | 796 | -- | -- |
| 733.14 | 1.27 | 5.97 | -4.22 | 2.79 | -- | -0.876 | -- | -1.11 | 10.6 | -- | -- | -- | -- |
| 736.24 | 1.27 | 5.97 | -4.26 | 2.8 | -- | -- | -- | -1.11 | 10.6 | -- | -- | -- | -- |
| 905.35 | 1.4 | 5.86 | -3.11 | -- | 4.38 | -- | -- | -0.33 | -- | 31.08 | 807 | -- | -- |
| 823.05 | 1.34 | 5.66 | -- | 2.73 | 4.38 | -- | -- | 0.252 | 10.4 | 23.4 | 3747 | -- | -- |
| 1217.5 | 1.63 | 6.04 | -4.31 | -- | -- | -- | -- | -1.13 | -- | -- | -- | -- | -- |
| 1214.89 | 1.63 | 5.86 | -- | 2.83 | -- | -- | -- | -0.637 | 10.7 | -- | -- | -- | -- |
| 1130.34 | 1.57 | 5.73 | -- | -- | 5.59 | -- | -- | 0.278 | -- | 30.1 | 831 | -- | -- |
| 1708.2 | 1.93 | 5.93 | -- | -- | -- | -- | -- | -0.647 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 560.11 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 2 | 560.14 | wind | 1.0 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 3 | 560.94 | wind | 1.0 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 4 | 561.13 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 11 | 562.61 | wind | 1.0 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 19 | 563.62 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 22 | 2 |
| 28 | 564.85 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 30 | 565.02 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 31 | 565.13 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 32 | 565.18 | wind | 1.0 | 14400 | > th | dose independent | rect. | 5 | 19 |
| 33 | 565.22 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 42 | 566.37 | wind | 1.0 | 14400 | < th | dose independent | rect. | 6 | 18 |
| 81 | 569.20 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 106 | 570.00 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 112 | 570.26 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 22 | 2 |
| 113 | 570.26 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 22 | 2 |
| 132 | 570.71 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 133 | 570.71 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 22 | 2 |
| 139 | 570.83 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 159 | 571.44 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 174 | 571.76 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 178 | 571.82 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 183 | 571.90 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 186 | 571.92 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 18 |
| 211 | 572.30 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 218 | 572.37 | wind | 1.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 219 | 572.37 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 229 | 572.46 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 238 | 572.53 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 257 | 572.69 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 12 |
| 258 | 572.70 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 18 | 5 |
| 277 | 572.95 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 10 |
| 280 | 572.97 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 325 | 573.35 | wind | 1.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 331 | 573.39 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 345 | 573.51 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 349 | 573.52 | humidity | 80.0 | 43200 | > th | dose dependent | sin | 13 | NA |
| 370 | 573.67 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 17 | 9 |
| 374 | 573.74 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 17 | 12 |
| 410 | 574.03 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 23 | 7 |
| 436 | 574.21 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 21 |
| 461 | 574.48 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 474 | 574.60 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 5 |
| 490 | 574.72 | humidity | 60.0 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 497 | 574.78 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 1 | 5 |
| 502 | 574.80 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 18 | 17 |
| 529 | 574.98 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 533 | 575.03 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 9 |
| 650 | 575.99 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 1 | 5 |
| 658 | 576.04 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 5 | 11 |
| 724 | 576.45 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 17 | 10 |
| 727 | 576.46 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 17 | 8 |
| 730 | 576.47 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 735 | 576.48 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 17 | 6 |
| 875 | 577.32 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 5 | 2 |
| 876 | 577.34 | humidity | 90.0 | 43200 | < th | dose independent | sin | 12 | NA |
| 891 | 577.44 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 894 | 577.46 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 914 | 577.66 | wind | 1.0 | 43200 | > th | dose independent | rect. | 10 | 14 |
| 915 | 577.66 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 17 | 10 |