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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0103500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : 2OG-Fe(II) oxygenase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.1 (0.0523) R2 : 0.769
β1 : -1.12 (0.194) R2dD : 0.0183 R2D : -0.00549
β2 : 1.24 (0.134) R2dC : 0.043 R2C : -0.0157
β3 : -3.86 (0.139) R2dE : 0.449 R2E : 0.564
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.76 (0.116) R2dN8 : 0.172 R2N8 : 0.243
σ : 0.965
deviance : 429.55
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_____
C
peak time of C : 5.26
E
wheather : temperature
threshold : 20.48
memory length : 1426
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.42
open length of G : 0.823

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
429.7 0.974 6.09 -1.08 1.23 -3.89 -0.233 0.0395 -1.75 5.22 20.32 1427 6.43 0.815
429.47 0.965 6.1 -1.1 1.24 -3.86 -0.233 -- -1.75 5.18 20.49 1425 6.43 0.817
429.64 0.965 6.08 -1.03 1.23 -3.9 -- 0.198 -1.72 5.25 20.44 1426 6.43 0.817
429.55 0.965 6.1 -1.12 1.24 -3.86 -- -- -1.76 5.26 20.48 1426 6.42 0.823
502.9 1.04 6.11 -0.963 -- -3.92 -- 0.27 -1.74 -- 20.28 1403 6.49 0.823
1156.77 1.59 6.32 -2.37 1.11 -- -0.309 -- -2.76 5.96 -- -- -- --
1156.97 1.59 6.32 -2.37 1.11 -- -- -- -2.76 6.05 -- -- -- --
502.57 1.04 6.12 -1.04 -- -3.91 -- -- -1.78 -- 20.27 1402 6.48 0.883
460.26 0.999 6.08 -- 1.22 -4.03 -- -- -1.64 5.17 20.43 1424 6.42 0.867
1220.75 1.63 6.34 -2.34 -- -- -- -- -2.74 -- -- -- -- --
1305.31 1.69 6.26 -- 1.07 -- -- -- -2.5 6.16 -- -- -- --
527.78 1.07 6.12 -- -- -4.26 -- -- -1.69 -- 19.79 1407 6.4 1.1
1365.24 1.72 6.28 -- -- -- -- -- -2.48 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 439.13 radiation 1 43200 > th dose independent rect. 18 1
12 447.73 temperature 20 1440 > th dose dependent rect. 6 2
15 451.65 temperature 20 1440 > th dose dependent rect. 4 5
17 454.39 temperature 20 1440 > th dose dependent rect. 16 18
20 455.74 temperature 20 1440 > th dose dependent rect. 18 17
32 458.56 radiation 1 43200 < th dose independent rect. 18 7
34 458.59 radiation 1 43200 < th dose independent rect. 18 9
36 458.65 radiation 1 43200 < th dose independent rect. 18 5
40 458.76 temperature 20 1440 > th dose dependent rect. 18 5
45 459.12 temperature 20 1440 > th dose dependent rect. 21 2
49 459.40 radiation 1 14400 > th dose independent rect. 18 13
72 464.06 radiation 1 14400 > th dose independent rect. 5 2
75 464.35 radiation 1 14400 < th dose independent rect. 5 2
92 464.98 radiation 1 14400 < th dose independent rect. 2 5
93 465.00 radiation 1 14400 < th dose independent rect. 24 7
114 466.71 temperature 20 1440 > th dose dependent sin 8 NA
142 469.64 temperature 30 1440 < th dose dependent rect. 6 2
150 470.98 temperature 20 43200 > th dose independent rect. 19 3
156 471.60 temperature 20 43200 > th dose independent rect. 15 9
162 471.78 radiation 1 14400 < th dose dependent rect. 18 1
170 472.15 radiation 1 14400 < th dose dependent rect. 18 5
176 472.24 temperature 20 43200 > th dose independent rect. 20 1
186 472.78 temperature 20 43200 > th dose independent rect. 12 14
209 473.36 temperature 20 43200 > th dose independent sin 17 NA
217 473.52 temperature 20 43200 > th dose independent rect. 9 17
227 473.77 temperature 20 43200 < th dose independent rect. 12 14
235 473.97 temperature 20 43200 < th dose independent rect. 14 12
248 474.41 temperature 20 43200 < th dose independent rect. 8 19
267 474.61 temperature 20 43200 < th dose independent rect. 15 9
314 475.10 temperature 20 43200 < th dose independent sin 17 NA
353 475.60 temperature 30 1440 < th dose dependent rect. 5 4
378 476.22 radiation 1 43200 < th dose dependent rect. 18 9
384 476.28 temperature 20 1440 > th dose dependent no NA NA
411 476.88 temperature 20 1440 > th dose dependent rect. 1 23
418 477.09 temperature 30 4320 < th dose dependent rect. 22 1
481 478.14 temperature 20 43200 > th dose independent rect. 1 23
504 478.42 radiation 1 14400 < th dose dependent rect. 18 13
510 478.52 temperature 20 43200 > th dose independent rect. 11 23
512 478.56 temperature 20 43200 < th dose independent rect. 11 23
513 478.58 temperature 20 43200 > th dose independent no NA NA
515 478.59 temperature 20 43200 < th dose independent rect. 19 23
520 478.61 temperature 20 43200 > th dose independent rect. 19 23
524 478.63 temperature 20 43200 < th dose independent rect. 1 23
527 478.65 temperature 20 43200 < th dose independent no NA NA
530 478.66 temperature 20 43200 > th dose independent rect. 14 23
534 478.70 temperature 20 43200 < th dose independent rect. 14 23
562 478.84 temperature 20 43200 > th dose independent rect. 23 23
568 478.87 temperature 20 43200 < th dose independent rect. 23 23
628 479.24 temperature 20 43200 < th dose dependent rect. 4 1
888 482.50 radiation 1 14400 > th dose independent rect. 18 16
915 482.70 temperature 20 43200 < th dose independent rect. 5 5
919 482.77 radiation 1 14400 > th dose independent sin 10 NA
954 483.29 temperature 20 43200 < th dose independent sin 4 NA
975 483.60 radiation 1 14400 > th dose independent rect. 18 18
988 483.69 temperature 20 43200 > th dose independent rect. 5 5