Os05g0158600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : OsGA2ox1.
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Os05g0158600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : OsGA2ox1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 203.89 | 0.671 | 3.07 | -0.284 | 0.225 | -0.356 | -1.04 | 1.25 | -0.105 | 22.3 | 39.55 | 37 | -- | -- |
| 206.89 | 0.67 | 3.08 | -0.301 | 0.207 | -0.361 | -0.697 | -- | -0.133 | 21.6 | 39.55 | 33 | -- | -- |
| 207.42 | 0.671 | 3.08 | -0.279 | 0.23 | -0.353 | -- | 0.623 | -0.106 | 22.2 | 39.47 | 34 | -- | -- |
| 208.35 | 0.672 | 3.08 | -0.294 | 0.236 | -0.387 | -- | -- | -0.113 | 22.2 | 39.45 | 33 | -- | -- |
| 210.15 | 0.675 | 3.07 | -0.271 | -- | -0.235 | -- | 0.671 | -0.111 | -- | 39.49 | 36 | -- | -- |
| 210.26 | 0.68 | 3.08 | -0.33 | 0.144 | -- | -0.693 | -- | -0.121 | 20.7 | -- | -- | -- | -- |
| 211.86 | 0.682 | 3.08 | -0.307 | 0.147 | -- | -- | -- | -0.121 | 20.6 | -- | -- | -- | -- |
| 211.19 | 0.677 | 3.07 | -0.296 | -- | -0.243 | -- | -- | -0.117 | -- | 39.35 | 25 | -- | -- |
| 210.64 | 0.676 | 3.07 | -- | 0.235 | -0.379 | -- | -- | -0.0874 | 22.1 | 39.46 | 33 | -- | -- |
| 213.07 | 0.682 | 3.07 | -0.307 | -- | -- | -- | -- | -0.122 | -- | -- | -- | -- | -- |
| 214.34 | 0.685 | 3.07 | -- | 0.148 | -- | -- | -- | -0.0865 | 20.5 | -- | -- | -- | -- |
| 213.52 | 0.681 | 3.06 | -- | -- | -0.261 | -- | -- | -0.09 | -- | 39.55 | 33 | -- | -- |
| 215.56 | 0.685 | 3.06 | -- | -- | -- | -- | -- | -0.0879 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 189.50 | humidity | 90 | 90 | < th | dose dependent | rect. | 2 | 3 |
| 3 | 189.69 | humidity | 90 | 30 | < th | dose independent | rect. | 3 | 1 |
| 4 | 189.70 | humidity | 80 | 90 | < th | dose independent | rect. | 2 | 3 |
| 12 | 189.78 | humidity | 90 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 31 | 192.73 | humidity | 80 | 90 | < th | dose dependent | rect. | 24 | 5 |
| 49 | 194.52 | radiation | 40 | 30 | < th | dose independent | sin | 14 | NA |
| 51 | 195.07 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 53 | 195.68 | radiation | 40 | 30 | > th | dose dependent | rect. | 13 | 1 |
| 54 | 195.72 | radiation | 20 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 76 | 195.88 | radiation | 30 | 10 | > th | dose independent | rect. | 13 | 1 |
| 84 | 196.79 | temperature | 30 | 90 | > th | dose dependent | rect. | 18 | 16 |
| 85 | 196.85 | temperature | 30 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 99 | 196.87 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 1 |
| 113 | 196.89 | radiation | 40 | 30 | > th | dose dependent | sin | 13 | NA |
| 238 | 198.43 | radiation | 40 | 30 | > th | dose independent | sin | 13 | NA |
| 239 | 198.44 | wind | 9 | 90 | > th | dose independent | rect. | 13 | 2 |
| 240 | 198.44 | wind | 9 | 90 | > th | dose dependent | rect. | 13 | 2 |
| 260 | 198.56 | wind | 9 | 10 | > th | dose independent | rect. | 13 | 1 |
| 272 | 198.56 | wind | 9 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 284 | 198.60 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 5 | 1 |
| 291 | 198.60 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 354 | 199.20 | humidity | 70 | 10 | < th | dose dependent | rect. | 12 | 4 |
| 380 | 199.59 | humidity | 70 | 90 | < th | dose independent | rect. | 12 | 1 |
| 383 | 199.60 | humidity | 70 | 10 | < th | dose dependent | rect. | 12 | 2 |
| 386 | 199.68 | temperature | 20 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 418 | 200.03 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 5 | 6 |
| 569 | 200.80 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 23 | 8 |
| 570 | 200.80 | radiation | 40 | 30 | < th | dose independent | rect. | 4 | 22 |
| 571 | 200.81 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 4 | 10 |
| 604 | 200.99 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 4 | 6 |
| 650 | 201.34 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 2 | 2 |
| 668 | 201.47 | radiation | 20 | 30 | < th | dose independent | rect. | 10 | 16 |
| 707 | 201.50 | radiation | 40 | 30 | < th | dose dependent | rect. | 11 | 15 |
| 708 | 201.51 | temperature | 20 | 90 | < th | dose independent | rect. | 2 | 2 |
| 721 | 201.60 | radiation | 40 | 30 | < th | dose dependent | rect. | 4 | 22 |
| 749 | 201.70 | temperature | 15 | 30 | > th | dose independent | rect. | 14 | 12 |
| 750 | 201.71 | temperature | 15 | 720 | > th | dose independent | rect. | 14 | 1 |
| 754 | 201.74 | humidity | 50 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 761 | 201.81 | humidity | 50 | 43200 | < th | dose dependent | rect. | 20 | 12 |
| 764 | 201.83 | humidity | 60 | 720 | > th | dose independent | rect. | 19 | 7 |
| 822 | 201.93 | radiation | 40 | 30 | < th | dose independent | rect. | 11 | 15 |
| 829 | 201.97 | humidity | 60 | 30 | > th | dose independent | rect. | 14 | 12 |
| 837 | 202.00 | temperature | 15 | 30 | > th | dose independent | rect. | 4 | 22 |
| 845 | 202.03 | humidity | 70 | 10 | < th | dose dependent | rect. | 12 | 8 |
| 871 | 202.15 | humidity | 90 | 1440 | > th | dose dependent | rect. | 4 | 14 |
| 874 | 202.18 | humidity | 50 | 43200 | > th | dose independent | rect. | 20 | 11 |
| 896 | 202.26 | humidity | 50 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 903 | 202.29 | humidity | 50 | 43200 | > th | dose independent | rect. | 21 | 9 |
| 938 | 202.39 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 19 | 7 |
| 941 | 202.41 | atmosphere | 1000 | 720 | < th | dose independent | rect. | 3 | 3 |
| 987 | 202.53 | humidity | 50 | 720 | > th | dose independent | rect. | 14 | 1 |
| 995 | 202.57 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 19 | 16 |