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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0560900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Isopenicillin N synthase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.26 (0.0402) R2 : 0.356
β1 : -1.32 (0.16) R2dD : 0.121 R2D : -0.138
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.88 (0.106) R2dE : 0.101 R2E : -0.0452
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -6.1 (0.634) R2dD*E : 0.162 R2D*E : -0.068
γ1 : -1.06 (0.0863) R2dN8 : 0.294 R2N8 : 0.122
σ : 0.745
deviance : 255.98
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 20.2
memory length : 275
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 0.954
open length of G : 3.07

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
251.12 0.745 5.26 -1.32 0.261 0.78 -0.506 -5.87 -1.05 0.876 20.2 275 1.03 2.99
285.37 0.793 5.2 -0.68 0.358 0.596 -2.47 -- -0.89 4.29 16.79 299 1.03 3.03
252.12 0.74 5.26 -1.32 0.258 0.801 -- -6.05 -1.06 0.365 20.2 276 1.03 3
294.44 0.799 5.2 -0.665 0.283 0.791 -- -- -0.864 21.2 14.96 328 1.03 2.53
255.98 0.745 5.26 -1.32 -- 0.88 -- -6.1 -1.06 -- 20.2 275 0.954 3.07
297.26 0.808 5.2 -0.695 0.602 -- -2.41 -- -0.918 4.01 -- -- -- --
313.52 0.829 5.2 -0.666 0.586 -- -- -- -0.904 3.44 -- -- -- --
298.69 0.805 5.21 -0.731 -- 0.73 -- -- -0.927 -- 18.1 321 0.662 3.07
307.02 0.816 5.2 -- 0.321 0.81 -- -- -0.86 20.4 14.46 333 1.03 2.46
332.81 0.852 5.2 -0.641 -- -- -- -- -0.889 -- -- -- -- --
325.21 0.844 5.18 -- 0.573 -- -- -- -0.83 3.44 -- -- -- --
311.35 0.822 5.19 -- -- 0.682 -- -- -0.85 -- 17.69 338 0.832 2.49
343.66 0.865 5.18 -- -- -- -- -- -0.817 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 252.96 temperature 20.0 270 > th dose independent rect. 1 3
3 255.49 temperature 20.0 10 > th dose independent rect. 3 1
4 255.98 temperature 20.0 90 > th dose independent rect. 1 6
14 257.86 wind 7.0 4320 < th dose independent rect. 21 1
16 258.21 wind 7.0 4320 > th dose independent rect. 21 1
19 258.75 wind 1.0 30 > th dose dependent rect. 2 5
21 259.12 wind 5.0 4320 > th dose dependent rect. 20 7
37 261.69 precipitation 0.1 270 > th dose dependent rect. 3 1
38 261.70 temperature 20.0 30 > th dose dependent rect. 3 1
39 261.81 precipitation 0.1 270 > th dose independent rect. 3 1
40 261.83 radiation 1.0 14400 < th dose dependent rect. 20 8
58 263.09 wind 5.0 4320 > th dose dependent rect. 20 1
59 263.26 wind 7.0 4320 < th dose independent rect. 20 8
64 263.43 wind 7.0 4320 > th dose independent rect. 20 7
71 264.23 radiation 1.0 14400 < th dose dependent rect. 22 6
75 264.32 precipitation 0.1 90 > th dose independent rect. 3 8
80 264.33 precipitation 0.1 90 > th dose dependent rect. 3 8
90 264.41 temperature 15.0 270 > th dose dependent rect. 1 3
114 265.21 temperature 10.0 270 > th dose dependent rect. 20 13
120 265.48 wind 1.0 270 < th dose independent rect. 23 5
123 265.50 temperature 10.0 90 > th dose dependent rect. 7 18
128 265.58 wind 3.0 90 > th dose independent rect. 2 5
132 265.68 temperature 10.0 10 > th dose dependent rect. 7 18
135 265.72 temperature 10.0 10 > th dose dependent rect. 4 23
172 266.05 atmosphere 1015.0 270 < th dose dependent rect. 1 3
200 266.16 atmosphere 995.0 14400 > th dose independent rect. 8 5
226 266.47 atmosphere 1015.0 90 < th dose dependent rect. 1 6
238 266.76 temperature 25.0 270 < th dose independent rect. 23 5
252 266.94 temperature 25.0 10 < th dose dependent rect. 24 22
269 267.09 atmosphere 1015.0 270 < th dose dependent rect. 23 6
290 267.33 temperature 10.0 10 > th dose dependent rect. 7 20
333 268.03 wind 5.0 90 > th dose independent rect. 1 7
335 268.06 wind 7.0 4320 > th dose independent rect. 18 4
351 268.18 wind 1.0 270 < th dose dependent rect. 22 6
388 268.61 temperature 15.0 720 > th dose dependent rect. 21 2
391 268.64 temperature 15.0 720 > th dose dependent rect. 20 4
398 268.70 precipitation 0.1 90 < th dose independent sin 5 NA
399 268.70 precipitation 0.1 90 < th dose dependent sin 5 NA
407 268.76 humidity 80.0 270 > th dose independent rect. 1 3
426 268.88 temperature 20.0 1440 > th dose dependent rect. 1 1
434 268.90 wind 5.0 270 > th dose independent rect. 24 4
437 268.92 precipitation 0.1 14400 > th dose dependent rect. 21 1
477 269.14 wind 5.0 270 < th dose independent rect. 20 14
500 269.32 wind 5.0 270 > th dose dependent rect. 3 1
501 269.33 precipitation 0.1 90 > th dose independent sin 5 NA
510 269.41 atmosphere 1015.0 10 < th dose dependent rect. 3 4
516 269.47 precipitation 0.1 30 < th dose independent sin 2 NA
517 269.47 precipitation 0.1 30 < th dose dependent sin 2 NA
545 269.66 wind 5.0 270 > th dose independent rect. 3 1
551 269.67 temperature 20.0 1440 > th dose dependent rect. 20 7
553 269.68 temperature 20.0 4320 > th dose independent rect. 22 1
559 269.69 wind 9.0 43200 > th dose independent rect. 16 5
579 269.79 precipitation 0.1 14400 > th dose dependent rect. 20 3
594 269.86 precipitation 0.1 90 > th dose dependent sin 5 NA
621 269.94 precipitation 0.1 30 > th dose independent sin 2 NA
643 270.07 precipitation 0.1 30 > th dose dependent sin 2 NA
661 270.19 temperature 30.0 90 < th dose independent rect. 2 15
664 270.20 radiation 10.0 30 < th dose independent rect. 3 5
680 270.23 radiation 1.0 270 < th dose independent rect. 23 15
699 270.32 temperature 10.0 270 > th dose dependent rect. 4 20
702 270.33 radiation 1.0 270 < th dose dependent rect. 23 15
743 270.50 precipitation 0.1 14400 > th dose independent rect. 21 1
749 270.50 wind 1.0 90 > th dose independent rect. 7 19
752 270.51 precipitation 0.1 14400 < th dose independent rect. 21 1
753 270.51 precipitation 0.1 14400 < th dose dependent rect. 21 1
756 270.52 radiation 20.0 30 < th dose dependent rect. 3 5
759 270.54 temperature 25.0 270 < th dose independent rect. 1 3
783 270.61 wind 9.0 4320 > th dose independent rect. 17 17
802 270.70 atmosphere 1000.0 270 > th dose independent rect. 1 3
832 270.80 radiation 1.0 270 < th dose dependent rect. 23 20
845 270.84 wind 1.0 270 < th dose dependent rect. 10 18
848 270.85 wind 1.0 270 < th dose independent rect. 11 17
907 271.06 precipitation 0.1 270 < th dose independent rect. 4 21
909 271.06 precipitation 0.1 270 < th dose dependent rect. 4 21
937 271.16 radiation 10.0 30 < th dose dependent rect. 3 14
974 271.27 wind 9.0 270 < th dose independent rect. 4 21
975 271.27 humidity 80.0 10 > th dose dependent rect. 3 13