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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0178100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : GA 3beta-hydroxylase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.03 (0.04) R2 : 0.131
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.85 (0.732) R2dE : 0.122 R2E : 0.115
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.222 (0.0843) R2dN8 : 0.0162 R2N8 : 0.00917
σ : 0.752
deviance : 260.57
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 998.1
memory length : 174
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6.68
open length of G : 0.567

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
257.94 0.748 2.53 3.37 0.0292 -111 0.278 678 0.251 19.6 1000 10 7 1
275.96 0.78 3.03 0.428 0.0292 2.82 0.274 -- 0.251 19.6 1000 10 7 1
258.13 0.754 2.53 3.36 0.0368 -111 -- 678 0.251 17.4 1000 10 7.06 1.01
263.34 0.756 3.02 0.445 0.00896 3.22 -- -- 0.28 7.58 996.5 221 5.89 0.8
258.2 0.752 2.53 3.36 -- -111 -- 678 0.25 -- 1000 10 7.06 1.01
291.48 0.8 3.03 0.456 0.0276 -- -0.105 -- 0.239 10.2 -- -- -- --
291.52 0.8 3.03 0.452 0.0283 -- -- -- 0.238 10.9 -- -- -- --
256.13 0.745 3.02 0.414 -- 5.81 -- -- 0.257 -- 997.2 194 6.25 0.7
260.92 0.752 3.03 -- 0.0873 5.45 -- -- 0.221 21.4 998.1 176 6.67 0.533
291.57 0.798 3.03 0.452 -- -- -- -- 0.238 -- -- -- -- --
296.91 0.806 3.04 -- 0.0258 -- -- -- 0.188 9.69 -- -- -- --
260.57 0.752 3.03 -- -- 5.85 -- -- 0.222 -- 998.1 174 6.68 0.567
296.95 0.804 3.04 -- -- -- -- -- 0.188 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 257.94 atmosphere 1000.0 10 < th dose independent rect. 7 1
8 257.94 atmosphere 1000.0 10 < th dose dependent rect. 7 1
27 261.21 atmosphere 1015.0 30 < th dose dependent rect. 20 1
28 261.33 temperature 25.0 30 > th dose dependent rect. 20 1
29 261.50 temperature 20.0 30 > th dose independent rect. 20 1
30 261.51 humidity 90.0 10 < th dose independent rect. 20 1
32 261.60 wind 7.0 30 < th dose independent rect. 20 1
35 261.62 radiation 10.0 1440 < th dose dependent rect. 21 1
38 261.63 temperature 15.0 30 > th dose dependent rect. 20 1
41 261.64 humidity 90.0 30 < th dose dependent rect. 20 1
42 261.67 wind 3.0 30 > th dose independent rect. 20 1
44 261.67 wind 7.0 30 < th dose dependent rect. 20 1
48 261.69 temperature 10.0 30 > th dose independent rect. 20 1
50 261.69 temperature 30.0 30 < th dose independent rect. 20 1
51 261.69 humidity 50.0 30 > th dose independent rect. 20 1
54 261.69 atmosphere 995.0 30 > th dose independent rect. 20 1
55 261.69 atmosphere 1010.0 30 < th dose independent rect. 20 1
57 261.69 radiation 1.0 30 < th dose independent rect. 20 1
62 261.69 precipitation 0.1 30 < th dose independent rect. 20 1
63 261.69 temperature 10.0 30 > th dose independent rect. 21 23
64 261.69 radiation 1.0 30 < th dose dependent rect. 20 1
69 261.69 precipitation 0.1 30 < th dose dependent rect. 20 1
70 261.71 radiation 20.0 43200 < th dose dependent rect. 21 1
77 261.78 humidity 50.0 30 > th dose dependent rect. 20 1
88 261.83 humidity 70.0 4320 > th dose independent rect. 21 1
90 261.86 temperature 10.0 1440 > th dose independent rect. 21 1
93 261.86 temperature 30.0 1440 < th dose independent rect. 21 1
97 261.86 humidity 50.0 1440 > th dose independent rect. 21 1
103 261.86 atmosphere 1005.0 30 > th dose independent rect. 20 1
104 261.86 atmosphere 995.0 1440 > th dose independent rect. 21 1
105 261.86 radiation 1.0 1440 < th dose independent rect. 21 1
125 261.86 temperature 10.0 1440 > th dose independent rect. 22 23
128 261.86 wind 1.0 30 > th dose dependent rect. 20 1
133 261.91 atmosphere 1005.0 30 > th dose dependent rect. 20 1
141 262.05 temperature 30.0 30 < th dose dependent rect. 20 1
181 262.61 wind 9.0 30 < th dose independent rect. 21 23
193 264.91 wind 9.0 1440 < th dose independent rect. 21 1
201 266.40 precipitation 0.1 30 < th dose independent rect. 21 23
202 266.40 precipitation 0.1 30 < th dose dependent rect. 21 23
211 267.91 atmosphere 1000.0 30 > th dose independent rect. 21 23
215 268.28 humidity 80.0 90 > th dose independent rect. 12 9
219 269.76 humidity 90.0 90 > th dose independent rect. 13 2
221 269.82 humidity 90.0 90 < th dose independent rect. 9 10
223 269.85 humidity 80.0 90 > th dose dependent rect. 13 2
227 270.21 humidity 50.0 30 > th dose independent rect. 21 23
248 271.01 precipitation 0.1 90 > th dose independent rect. 13 1
251 271.01 precipitation 0.1 90 > th dose dependent rect. 13 1
255 271.05 precipitation 0.1 270 > th dose independent rect. 9 5
287 271.33 precipitation 0.1 270 > th dose dependent rect. 8 6
299 271.54 humidity 90.0 10 < th dose independent rect. 10 10
314 271.68 temperature 10.0 30 > th dose dependent rect. 21 23
356 272.08 precipitation 0.1 30 > th dose independent rect. 7 7
467 272.51 radiation 20.0 270 < th dose independent rect. 10 22
483 272.64 atmosphere 1015.0 30 < th dose independent rect. 21 23
489 272.72 humidity 80.0 90 > th dose independent rect. 7 14
583 274.21 humidity 70.0 90 > th dose independent rect. 12 22
589 274.29 radiation 20.0 270 < th dose independent rect. 13 1
617 274.72 humidity 60.0 90 > th dose dependent rect. 12 9
632 274.87 radiation 30.0 270 < th dose dependent rect. 10 22
636 274.91 precipitation 0.1 1440 < th dose independent rect. 21 1
638 274.91 precipitation 0.1 1440 < th dose dependent rect. 21 1
663 275.12 temperature 25.0 270 > th dose dependent rect. 4 1
689 275.34 radiation 20.0 270 < th dose independent rect. 12 9
695 275.44 wind 1.0 270 < th dose independent rect. 6 1
703 275.49 precipitation 0.1 90 < th dose independent rect. 9 10
704 275.49 precipitation 0.1 90 < th dose dependent rect. 9 10
705 275.50 temperature 10.0 90 > th dose dependent rect. 9 10
710 275.59 radiation 30.0 270 < th dose dependent rect. 13 1
725 275.73 precipitation 0.1 90 < th dose independent rect. 19 14
726 275.73 precipitation 0.1 90 < th dose dependent rect. 19 14
735 275.90 humidity 80.0 30 < th dose independent sin 21 NA
752 276.04 temperature 25.0 720 > th dose dependent rect. 22 10
764 276.13 humidity 80.0 30 > th dose independent sin 21 NA
794 276.23 atmosphere 1000.0 270 < th dose independent rect. 4 1
823 276.33 radiation 40.0 270 < th dose dependent rect. 12 9
831 276.38 humidity 70.0 90 > th dose independent rect. 19 14
862 276.46 wind 7.0 90 < th dose independent rect. 19 14
897 276.70 humidity 70.0 90 > th dose independent rect. 19 22
921 276.77 humidity 60.0 30 > th dose dependent rect. 7 15
937 276.87 temperature 30.0 90 < th dose independent rect. 19 14
939 276.87 humidity 70.0 30 > th dose dependent sin 21 NA
967 277.02 temperature 30.0 30 < th dose independent rect. 21 23
978 277.07 temperature 10.0 90 > th dose independent rect. 9 10
979 277.07 atmosphere 1015.0 90 < th dose independent rect. 9 10
980 277.07 temperature 10.0 90 > th dose independent rect. 19 14
981 277.07 humidity 50.0 90 > th dose independent rect. 19 14
983 277.07 atmosphere 995.0 90 > th dose independent rect. 19 14