Os03g0618300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Isopenicillin N synthase family protein.
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Os03g0618300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Isopenicillin N synthase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 148.63 | 0.573 | 13.5 | -0.0785 | 1.4 | 1.39 | 1.68 | -1.82 | -0.595 | 9.35 | 20.27 | 1361 | -- | -- |
| 150.44 | 0.571 | 13.5 | 0.438 | 1.71 | 1.61 | 2.02 | -- | -0.43 | 9.26 | 17.84 | 909 | -- | -- |
| 158.69 | 0.587 | 13.5 | -0.0556 | 1.4 | 1.39 | -- | -1.95 | -0.598 | 9.27 | 20.39 | 1353 | -- | -- |
| 161.82 | 0.592 | 13.5 | 0.457 | 1.69 | 1.89 | -- | -- | -0.458 | 9.26 | 14.9 | 941 | -- | -- |
| 269.87 | 0.765 | 13.6 | 0.0377 | -- | 1.32 | -- | -1.64 | -0.562 | -- | 20.21 | 1462 | -- | -- |
| 203.15 | 0.668 | 13.4 | 0.936 | 1.37 | -- | 1.69 | -- | -0.142 | 9.03 | -- | -- | -- | -- |
| 212.95 | 0.683 | 13.4 | 0.993 | 1.37 | -- | -- | -- | -0.142 | 8.9 | -- | -- | -- | -- |
| 269.94 | 0.769 | 13.5 | 0.654 | -- | 1.82 | -- | -- | -0.382 | -- | 14.9 | 941 | -- | -- |
| 166.91 | 0.602 | 13.5 | -- | 1.73 | 2.12 | -- | -- | -0.514 | 9.28 | 14.8 | 935 | -- | -- |
| 320.34 | 0.836 | 13.5 | 0.993 | -- | -- | -- | -- | -0.133 | -- | -- | -- | -- | -- |
| 238.94 | 0.723 | 13.4 | -- | 1.37 | -- | -- | -- | -0.253 | 8.85 | -- | -- | -- | -- |
| 273.97 | 0.771 | 13.6 | -- | -- | 1.74 | -- | -- | -0.66 | -- | 10.37 | 8702 | -- | -- |
| 346.34 | 0.869 | 13.5 | -- | -- | -- | -- | -- | -0.243 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 132.83 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 137.55 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 5 | 138.41 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 4 |
| 7 | 138.48 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 9 | 138.86 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 10 | 138.97 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 11 | 139.04 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 12 | 139.04 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 15 | 139.53 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 24 | 141.25 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 27 | 141.75 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 31 | 142.02 | wind | 5.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 33 | 142.25 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 47 | 143.62 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 65 | 143.91 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 67 | 144.03 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 5 |
| 69 | 144.03 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 5 |
| 73 | 144.16 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 5 |
| 82 | 144.64 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 19 |
| 84 | 144.76 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 96 | 145.11 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 100 | 145.19 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 103 | 145.22 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 13 |
| 106 | 145.24 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 6 |
| 108 | 145.24 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 6 |
| 110 | 145.25 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 6 |
| 113 | 145.31 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 143 | 145.75 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 154 | 145.93 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 8 | 10 |
| 155 | 145.93 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 8 | 10 |
| 171 | 146.06 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 8 | 10 |
| 181 | 146.23 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 182 | 146.23 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 19 | NA |
| 192 | 146.30 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 19 | 16 |
| 206 | 146.53 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 208 | 146.54 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 16 | 2 |
| 210 | 146.54 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 16 | 2 |
| 225 | 146.70 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 16 | 2 |
| 231 | 146.79 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 237 | 146.82 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 6 |
| 248 | 146.95 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 265 | 147.11 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 271 | 147.14 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 8 |
| 279 | 147.19 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 284 | 147.21 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 310 | 147.43 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 355 | 147.63 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 366 | 147.69 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 488 | 148.14 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 560 | 148.40 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 574 | 148.43 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 16 | 5 |
| 720 | 148.98 | temperature | 20.0 | 1440 | > th | dose dependent | no | NA | NA |
| 743 | 149.09 | temperature | 30.0 | 1440 | < th | dose dependent | sin | 20 | NA |
| 753 | 149.14 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 19 | 6 |
| 784 | 149.20 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 14 | 7 |
| 794 | 149.22 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 13 |
| 818 | 149.29 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 856 | 149.47 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 860 | 149.48 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 14 | 5 |
| 863 | 149.48 | temperature | 20.0 | 720 | > th | dose dependent | sin | 10 | NA |
| 904 | 149.65 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 920 | 149.72 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 962 | 149.91 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 972 | 149.94 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 8 | 11 |