Os08g0480200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 2OG-Fe(II) oxygenase domain containing protein.
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Os08g0480200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 2OG-Fe(II) oxygenase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 230.67 | 0.714 | 9.74 | 0.842 | 4.29 | -6.16 | 0.26 | 0.829 | 0.0652 | 15 | 9.379 | 748 | 17.6 | 12.5 |
| 225.58 | 0.7 | 9.69 | 0.889 | 4.28 | -6.45 | 0.482 | -- | 0.135 | 14.7 | 3.793 | 833 | 16.5 | 13.5 |
| 229.94 | 0.706 | 9.72 | 0.921 | 4.31 | -6.2 | -- | 0.975 | 0.0746 | 14.9 | 8.999 | 770 | 17.3 | 12.7 |
| 222.66 | 0.695 | 9.74 | 0.751 | 4.07 | -6.7 | -- | -- | -0.00941 | 14.5 | 2.261 | 829 | 16.6 | 13.5 |
| 395.46 | 0.926 | 9.52 | 1.38 | -- | -9.74 | -- | 3.51 | 0.932 | -- | -28.03 | 1882 | 18.2 | 12.8 |
| 392.21 | 0.928 | 9.96 | 0.0547 | 8.05 | -- | 0.735 | -- | -0.512 | 16.3 | -- | -- | -- | -- |
| 393.71 | 0.929 | 9.95 | 0.0619 | 8.05 | -- | -- | -- | -0.508 | 16.3 | -- | -- | -- | -- |
| 279.31 | 0.778 | 9.7 | 0.756 | -- | -9.31 | -- | -- | 0.00059 | -- | -58.05 | 1914 | 18.6 | 11.6 |
| 237.22 | 0.717 | 9.76 | -- | 4 | -6.62 | -- | -- | -0.105 | 14.5 | 1.751 | 816 | 16.6 | 13.4 |
| 3892.38 | 2.92 | 9.91 | -0.26 | -- | -- | -- | -- | -0.722 | -- | -- | -- | -- | -- |
| 393.81 | 0.928 | 9.96 | -- | 8.05 | -- | -- | -- | -0.515 | 16.3 | -- | -- | -- | -- |
| 289.01 | 0.792 | 9.74 | -- | -- | -9.07 | -- | -- | -0.0762 | -- | -64.86 | 1929 | 18.5 | 11.6 |
| 3894.16 | 2.91 | 9.9 | -- | -- | -- | -- | -- | -0.693 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 234.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 12 |
| 23 | 249.84 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 7 |
| 28 | 251.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 5 |
| 36 | 252.62 | temperature | 20 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 55 | 254.51 | temperature | 30 | 720 | < th | dose dependent | sin | 13 | NA |
| 61 | 254.84 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 9 |
| 62 | 254.87 | temperature | 20 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 65 | 254.93 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 81 | 255.27 | temperature | 25 | 14400 | > th | dose dependent | rect. | 14 | 16 |
| 85 | 255.30 | temperature | 25 | 14400 | < th | dose independent | rect. | 13 | 17 |
| 96 | 255.40 | temperature | 25 | 14400 | > th | dose independent | rect. | 13 | 17 |
| 99 | 255.44 | temperature | 25 | 14400 | < th | dose independent | sin | 15 | NA |
| 100 | 255.44 | temperature | 25 | 14400 | > th | dose dependent | sin | 15 | NA |
| 108 | 255.56 | temperature | 25 | 14400 | > th | dose independent | sin | 15 | NA |
| 116 | 255.61 | temperature | 25 | 14400 | < th | dose independent | rect. | 14 | 13 |
| 141 | 255.75 | temperature | 20 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 165 | 255.93 | temperature | 25 | 14400 | > th | dose independent | rect. | 15 | 11 |
| 309 | 256.75 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 21 |
| 325 | 256.85 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 16 |
| 327 | 256.86 | temperature | 15 | 720 | > th | dose dependent | sin | 12 | NA |
| 370 | 257.06 | temperature | 25 | 14400 | > th | dose independent | rect. | 19 | 21 |
| 409 | 257.20 | temperature | 25 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 452 | 257.36 | temperature | 25 | 14400 | < th | dose independent | no | NA | NA |
| 462 | 257.40 | temperature | 25 | 14400 | < th | dose independent | rect. | 4 | 23 |
| 478 | 257.45 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 500 | 257.53 | temperature | 25 | 14400 | < th | dose independent | rect. | 22 | 23 |
| 507 | 257.55 | temperature | 25 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 548 | 257.69 | temperature | 25 | 14400 | > th | dose independent | no | NA | NA |
| 580 | 257.77 | temperature | 25 | 14400 | > th | dose independent | rect. | 3 | 23 |
| 614 | 257.88 | temperature | 25 | 14400 | > th | dose independent | rect. | 22 | 23 |
| 689 | 258.10 | temperature | 25 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 704 | 258.14 | humidity | 90 | 43200 | > th | dose dependent | rect. | 15 | 9 |
| 731 | 258.22 | humidity | 90 | 43200 | > th | dose dependent | rect. | 12 | 12 |
| 816 | 258.44 | temperature | 25 | 14400 | > th | dose dependent | rect. | 3 | 21 |
| 857 | 258.54 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 896 | 258.59 | temperature | 25 | 43200 | > th | dose independent | rect. | 12 | 6 |
| 925 | 258.63 | temperature | 25 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 953 | 258.68 | temperature | 25 | 14400 | > th | dose dependent | rect. | 18 | 23 |
| 974 | 258.71 | temperature | 25 | 14400 | > th | dose dependent | rect. | 21 | 23 |
| 983 | 258.73 | temperature | 25 | 43200 | < th | dose independent | rect. | 12 | 7 |