Os01g0209700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GA 2-oxidase 5.
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Os01g0209700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GA 2-oxidase 5.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 118.34 | 0.511 | 3.32 | -0.285 | 0.259 | 5.05 | -0.731 | 13.7 | -0.102 | 8.74 | 9.7 | 333 | -- | -- |
| 120.43 | 0.511 | 3.26 | -0.444 | 0.264 | 2.52 | -0.501 | -- | -0.108 | 7.19 | 10.41 | 406 | -- | -- |
| 119.74 | 0.51 | 3.31 | -0.328 | 0.263 | 5.05 | -- | 13.3 | -0.105 | 8.58 | 9.72 | 348 | -- | -- |
| 120.79 | 0.512 | 3.26 | -0.403 | 0.27 | 2.32 | -- | -- | -0.0803 | 8.51 | 10.48 | 427 | -- | -- |
| 123.52 | 0.518 | 3.32 | -0.333 | -- | 4.98 | -- | 13.3 | -0.101 | -- | 9.7 | 351 | -- | -- |
| 133.06 | 0.541 | 3.27 | -0.543 | 0.203 | -- | -0.479 | -- | -0.131 | 9.42 | -- | -- | -- | -- |
| 133.89 | 0.542 | 3.27 | -0.561 | 0.206 | -- | -- | -- | -0.132 | 9.17 | -- | -- | -- | -- |
| 124.77 | 0.52 | 3.27 | -0.468 | -- | 2.12 | -- | -- | -0.0934 | -- | 10.47 | 427 | -- | -- |
| 126.27 | 0.523 | 3.25 | -- | 0.277 | 2.46 | -- | -- | -0.0354 | 8.71 | 10.46 | 444 | -- | -- |
| 136.35 | 0.546 | 3.28 | -0.561 | -- | -- | -- | -- | -0.131 | -- | -- | -- | -- | -- |
| 142.18 | 0.558 | 3.26 | -- | 0.206 | -- | -- | -- | -0.0695 | 9.37 | -- | -- | -- | -- |
| 130.25 | 0.532 | 3.26 | -- | -- | 2.47 | -- | -- | -0.0401 | -- | 10.4 | 351 | -- | -- |
| 144.67 | 0.561 | 3.26 | -- | -- | -- | -- | -- | -0.0687 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 111.85 | humidity | 70 | 4320 | < th | dose independent | rect. | 20 | 11 |
| 2 | 111.91 | humidity | 70 | 4320 | < th | dose dependent | rect. | 20 | 11 |
| 3 | 113.01 | humidity | 70 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 13 | 113.09 | humidity | 70 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 24 | 113.57 | humidity | 70 | 10 | < th | dose dependent | sin | 9 | NA |
| 39 | 114.37 | humidity | 90 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 40 | 114.43 | radiation | 40 | 10 | < th | dose independent | sin | 10 | NA |
| 41 | 114.46 | humidity | 90 | 270 | < th | dose dependent | rect. | 24 | 9 |
| 46 | 114.82 | humidity | 70 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 56 | 115.57 | humidity | 80 | 720 | < th | dose independent | rect. | 2 | 5 |
| 58 | 115.58 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 5 |
| 65 | 115.64 | radiation | 30 | 10 | > th | dose dependent | sin | 10 | NA |
| 66 | 115.65 | humidity | 80 | 270 | < th | dose dependent | rect. | 22 | 9 |
| 67 | 115.67 | humidity | 80 | 720 | < th | dose independent | rect. | 24 | 7 |
| 69 | 115.68 | humidity | 90 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 76 | 115.77 | wind | 9 | 30 | > th | dose independent | rect. | 15 | 11 |
| 94 | 115.78 | humidity | 80 | 270 | < th | dose independent | rect. | 5 | 2 |
| 120 | 115.95 | radiation | 20 | 270 | > th | dose dependent | rect. | 6 | 1 |
| 140 | 116.03 | humidity | 70 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 141 | 116.03 | humidity | 70 | 1440 | > th | dose independent | rect. | 24 | 8 |
| 186 | 116.11 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 1 |
| 202 | 116.12 | humidity | 70 | 1440 | > th | dose independent | rect. | 20 | 12 |
| 233 | 116.18 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 10 |
| 237 | 116.19 | radiation | 20 | 270 | > th | dose independent | rect. | 6 | 1 |
| 285 | 116.51 | wind | 9 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 305 | 116.78 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 4 |
| 314 | 116.86 | humidity | 70 | 90 | < th | dose dependent | rect. | 6 | 5 |
| 371 | 117.27 | humidity | 70 | 90 | < th | dose independent | sin | 9 | NA |
| 386 | 117.29 | wind | 9 | 90 | > th | dose dependent | sin | 14 | NA |
| 401 | 117.31 | wind | 9 | 90 | > th | dose independent | sin | 13 | NA |
| 472 | 117.33 | wind | 9 | 30 | > th | dose independent | rect. | 15 | 7 |
| 498 | 117.39 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 1 |
| 509 | 117.48 | wind | 9 | 30 | > th | dose dependent | rect. | 15 | 11 |
| 547 | 117.59 | humidity | 60 | 90 | < th | dose independent | rect. | 8 | 3 |
| 606 | 117.77 | wind | 9 | 90 | > th | dose dependent | rect. | 14 | 9 |
| 614 | 117.79 | wind | 9 | 270 | > th | dose independent | rect. | 12 | 22 |
| 617 | 117.81 | wind | 9 | 720 | > th | dose independent | rect. | 14 | 2 |
| 660 | 117.97 | wind | 9 | 90 | < th | dose independent | sin | 15 | NA |
| 697 | 118.07 | humidity | 70 | 10 | < th | dose dependent | rect. | 7 | 3 |
| 731 | 118.16 | wind | 9 | 270 | > th | dose independent | rect. | 12 | 11 |
| 734 | 118.16 | humidity | 50 | 90 | > th | dose dependent | sin | 6 | NA |
| 976 | 118.75 | humidity | 50 | 10 | > th | dose dependent | rect. | 23 | 23 |