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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0332200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.01 (0.0548) R2 : 0.865
β1 : -1.08 (0.201) R2dD : 0.0106 R2D : -0.00879
β2 : 1.92 (0.139) R2dC : 0.0593 R2C : 0.0311
β3 : -5.92 (0.119) R2dE : 0.744 R2E : 0.731
β4 : 3.75 (0.598) R2dD*C : 0.0106 R2D*C : -0.000467
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.34 (0.117) R2dN8 : 0.0538 R2N8 : 0.0467
σ : 1.02
deviance : 483.28
__
_____
C
peak time of C : 20
E
wheather : radiation
threshold : 30.06
memory length : 267
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.7
open length of G : 16.6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
471.89 1.02 7.01 -1.18 2.33 -5.08 3.6 2.25 -1.36 18.4 29.68 258 15.6 16.8
483.28 1.02 7.01 -1.08 1.92 -5.92 3.75 -- -1.34 20 30.06 267 15.7 16.6
502.98 1.04 7.02 -1.11 2.34 -5.02 -- 1.99 -1.35 18.3 29.03 256 15.6 16.8
514.83 1.06 7.02 -1.3 2.35 -5.04 -- -- -1.36 18.3 28.09 256 15.5 16.8
612.83 1.15 6.96 -1.24 -- -5.99 -- 0.841 -1.35 -- 51.76 245 17.4 15.5
691.65 1.23 7 -1.27 6.83 -- -0.768 -- -1.44 15.3 -- -- -- --
693.52 1.23 7.01 -1.28 6.83 -- -- -- -1.44 15.3 -- -- -- --
607.98 1.15 6.95 -1.27 -- -6.09 -- -- -1.38 -- 70.14 312 17.1 14.9
559 1.1 6.98 -- 2.35 -5.14 -- -- -1.21 18.5 29.87 256 15.6 16.7
3332.79 2.7 7.02 -1.57 -- -- -- -- -1.62 -- -- -- -- --
736.86 1.27 6.98 -- 6.85 -- -- -- -1.3 15.3 -- -- -- --
648.12 1.19 6.94 -- -- -6.16 -- -- -1.26 -- 41.27 317 17 15
3397.99 2.72 6.98 -- -- -- -- -- -1.45 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 479.54 radiation 30.0 270 < th dose dependent rect. 15 17
3 482.70 radiation 20.0 270 < th dose independent rect. 16 16
18 502.25 humidity 70.0 90 > th dose independent rect. 17 16
25 505.07 humidity 50.0 270 > th dose independent rect. 16 15
28 506.07 radiation 1.0 90 > th dose independent rect. 9 20
30 506.65 radiation 1.0 90 > th dose independent rect. 9 10
54 509.62 temperature 15.0 270 > th dose dependent rect. 2 7
57 511.25 humidity 50.0 270 > th dose dependent rect. 3 17
67 514.68 radiation 40.0 270 < th dose dependent rect. 14 7
69 515.15 humidity 50.0 270 > th dose independent rect. 15 6
71 515.94 radiation 10.0 270 < th dose dependent rect. 13 7
74 516.73 temperature 30.0 90 < th dose independent rect. 17 16
76 516.81 radiation 10.0 270 < th dose dependent rect. 11 9
84 517.97 temperature 20.0 270 > th dose independent rect. 3 6
87 518.42 radiation 10.0 270 < th dose dependent rect. 4 16
91 518.69 radiation 1.0 90 > th dose independent sin 21 NA
101 519.65 radiation 20.0 270 < th dose independent rect. 15 6
113 521.88 radiation 10.0 90 < th dose dependent sin 20 NA
122 523.03 temperature 30.0 270 < th dose independent rect. 15 6
132 523.97 radiation 1.0 90 < th dose independent sin 21 NA
154 525.20 humidity 50.0 270 > th dose independent rect. 3 17
170 526.68 precipitation 0.1 270 < th dose independent rect. 7 10
171 526.68 precipitation 0.1 270 < th dose dependent rect. 7 10
174 526.98 atmosphere 995.0 270 > th dose independent rect. 16 15
175 527.01 humidity 60.0 270 > th dose independent rect. 16 4
184 527.46 temperature 10.0 270 > th dose independent rect. 7 9
185 527.46 atmosphere 1015.0 270 < th dose independent rect. 7 9
186 527.46 temperature 10.0 270 > th dose independent rect. 16 15
203 527.99 humidity 50.0 90 > th dose dependent rect. 5 16
221 529.15 radiation 1.0 270 > th dose independent rect. 7 10
230 529.69 temperature 15.0 270 > th dose independent rect. 15 6
238 529.96 wind 9.0 270 < th dose independent rect. 16 15
242 530.36 wind 9.0 270 < th dose independent rect. 8 8
257 530.88 humidity 50.0 270 > th dose dependent rect. 2 9
260 531.08 humidity 50.0 4320 > th dose independent rect. 19 15
268 531.82 radiation 10.0 270 < th dose independent rect. 4 16
269 531.85 humidity 50.0 90 > th dose dependent rect. 17 16
278 532.45 radiation 10.0 270 < th dose independent rect. 3 18
284 532.85 wind 1.0 270 > th dose independent rect. 8 8
285 532.86 atmosphere 995.0 270 > th dose independent rect. 15 6
302 533.68 precipitation 0.1 270 < th dose independent rect. 21 18
303 533.68 precipitation 0.1 270 < th dose dependent rect. 21 18
308 533.87 temperature 10.0 270 > th dose independent rect. 21 18
313 534.01 temperature 10.0 1440 > th dose independent rect. 10 9
316 534.01 temperature 10.0 1440 > th dose independent rect. 19 15
319 534.01 atmosphere 995.0 1440 > th dose independent rect. 19 15
338 534.28 humidity 50.0 270 > th dose dependent rect. 15 5
339 534.33 wind 1.0 270 > th dose independent rect. 21 18
340 534.51 temperature 20.0 270 > th dose independent rect. 4 16
358 535.14 atmosphere 995.0 270 > th dose independent rect. 8 8
366 535.51 atmosphere 995.0 270 > th dose independent rect. 21 18
367 535.63 atmosphere 1010.0 270 < th dose independent rect. 15 6
374 535.89 radiation 1.0 30 < th dose dependent rect. 15 7
387 536.39 wind 9.0 270 < th dose independent rect. 21 18
388 536.43 wind 1.0 270 > th dose independent rect. 15 6
398 536.53 temperature 30.0 720 < th dose dependent rect. 22 9
405 536.75 radiation 1.0 90 < th dose independent rect. 7 15
420 537.17 wind 9.0 270 < th dose independent rect. 15 6
488 538.57 precipitation 0.1 270 < th dose independent rect. 16 16
489 538.57 precipitation 0.1 270 < th dose dependent rect. 16 16
522 539.28 temperature 10.0 720 > th dose dependent rect. 23 7
527 539.44 humidity 70.0 270 > th dose independent rect. 2 18
536 539.64 radiation 1.0 270 < th dose independent rect. 17 2
551 540.12 precipitation 0.1 90 < th dose independent rect. 18 15
553 540.12 precipitation 0.1 90 < th dose dependent rect. 18 15
566 540.52 precipitation 0.1 270 < th dose independent rect. 15 6
567 540.52 precipitation 0.1 270 < th dose dependent rect. 15 6
578 540.84 radiation 1.0 270 > th dose independent sin 0 NA
593 541.39 humidity 50.0 270 > th dose independent rect. 21 18
598 541.62 humidity 50.0 270 > th dose dependent rect. 17 2
641 542.54 atmosphere 995.0 270 > th dose dependent rect. 21 18
655 542.89 humidity 70.0 30 > th dose independent rect. 5 17
711 544.32 temperature 20.0 720 < th dose independent rect. 22 10
749 544.96 humidity 50.0 90 > th dose dependent rect. 17 18
766 545.43 radiation 30.0 10 < th dose independent rect. 18 17
788 545.79 humidity 70.0 270 > th dose independent rect. 2 8
946 548.56 temperature 20.0 720 < th dose independent rect. 1 6
983 549.20 atmosphere 1015.0 270 < th dose independent rect. 21 18